PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do024028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 770aa MW: 88132.3 Da PI: 6.2154 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.1 | 2.2e-29 | 427 | 571 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikev.d...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tk 79 lp+G++F+P+d el+ e+L++k+ + +e+i++v d i++++P++Lp +k++ ++ +fF++ +k+y +g+rk+r + Do024028.1 427 LPAGVKFDPSDLELL-EHLEEKIGLGGlnphvlI--DEFIPTVeDdegICYTHPENLP-GMKKDGSSAHFFHRVSKAYGRGQRKRRRvvscsdhavaDE 521 799************.99****988876665432..333444421344**********.67788899*******************6588888887656 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrap..kgektdWvmheyrl 128 + +W++tg++k++++ +g ++g kk++v+yk +++ k+ +++Wvmh+y+l Do024028.1 522 HVRWHKTGRSKPIYE-NGVKKGWKKIMVLYKTQQKggKPDRAHWVMHQYHL 571 899************.999***********76555115569********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04724 | 5.6E-168 | 41 | 373 | IPR006813 | Glycosyl transferase, family 17 |
SuperFamily | SSF101941 | 1.27E-34 | 411 | 590 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.743 | 427 | 590 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-11 | 428 | 571 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006487 | Biological Process | protein N-linked glycosylation | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003830 | Molecular Function | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 770 aa Download sequence Send to blast |
MEAGYCNRKK TDICEGVCDN ECGSKSVLSM SRLKCALRGF DLRALLILLI GVPILIFAIY 60 VHGQKVTYFL RPIWEKPPKP FTILPHYYSE NVTMNNLCKL HGWKVRETPR RVFDAVLFSN 120 EMDILDIRWH ELSPYVSEFV LLESNSTFTG IKKDLHFKEN RQRFEFAESR LTYGMIGGRF 180 VKGENPFVEE SYQRVALDQL IKIAGITHDD LLIMSDVDEI PSGHTINLLR WCDDIPEILH 240 LQLRNYLYSF QFLLDDKSWR ASVHRYRAGN TRYAHFRQTD KLLADSGWHC SFCFRYINDF 300 VFKMKAYSHV DRIRFKYFLD PKRIQHVICE GADLFDMLPE EYTFQEIIAK LGPIPSTFSA 360 VHLPAYLLEQ IDRSWLITYR GIAKKIRYTT PSANRQISGL IAEARRECPN CSHVIDNSDV 420 AMQWPGLPAG VKFDPSDLEL LEHLEEKIGL GGLNPHVLID EFIPTVEDDE GICYTHPENL 480 PGMKKDGSSA HFFHRVSKAY GRGQRKRRRV VSCSDHAVAD EHVRWHKTGR SKPIYENGVK 540 KGWKKIMVLY KTQQKGGKPD RAHWVMHQYH LGEEEDEKDG ELAVSKIFCQ IPNKRMEVSE 600 TETACEEPDT STSVIGPKTP KTNTPQPRHP NNSPCETDLN VSILQDQLLL QDEEGPTISI 660 VSLEDDAVNP AWCAGAEEPQ ASGGASRAQL NPDESLLCRE DPNSLNDEAL LPLDYPILSQ 720 CRNEILDRNL NTFYGLPDLH NVDLGTPPDL QLADLQFGSQ ESFGSWLDRI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 504 | 508 | RKRRR |
2 | 505 | 509 | KRRRV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do024028.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU952477 | 0.0 | EU952477.1 Zea mays clone 1281886 N-acetylglucosaminyltransferase III mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6F268 | 0.0 | A0A3L6F268_MAIZE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-73 | NAC family protein |