PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024027.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SRS
Protein Properties Length: 368aa    MW: 37582.7 Da    PI: 9.4152
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024027.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702141.11e-43882542127
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskke 99 
                 +sg+a+C+dCGnqakk+C+h+RCRtCC+srgf+C thv+stWvpaa+rrer q +  as   aa    a +k++r   +++++++ s+t++s+a+++++
  Do024027.1  88 GSGAATCHDCGNQAKKGCSHSRCRTCCNSRGFECDTHVRSTWVPAARRRERLQLAGGASPPPAA---PAVAKKPRLAcQTATTTTNSRTSTSNATTPRS 183
                 57889**********************************************9998888766654...5666777766245566677789999999**** PP

      DUF702 100 letss...........................................lPeevsseavfrcvrvssvddge 127
                 l+tss                                           lP++v+ +avfrcvrv+svddg 
  Do024027.1 184 LDTSSshqgnhiigrhqlstiaysdtiqerslshrfpsssadalfkgnLPRQVRGPAVFRCVRVTSVDDGG 254
                 *999999*************************************************************964 PP
2DUF70265.32.1e-20266322103154
      DUF702 103 sslPeevsseavfrcvrvssvdd.....geeelaYqtavsigGhvfkGiLydqGlee 154
                  +lP++v+ +avfrcvrv+svdd     g+ e+aYq+av+i+Gh+f+G+Lyd+G+++
  Do024027.1 266 GNLPRQVRGPAVFRCVRVTSVDDggggnGHGEVAYQAAVTINGHLFRGLLYDHGADT 322
                 469*******************9544334679**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.2E-3691253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-2493135IPR006510Zinc finger, lateral root primordium type 1
PfamPF051421.4E-17265321IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016242.1E-20268319IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLVVAPAGSF HHQRAAADDP VFPLISAAQR TLIDADAASG KPPASSGAAI QFWHPEPQAG  60
ASAAADGGSP GKKALAMLDQ GRGGSGSGSG AATCHDCGNQ AKKGCSHSRC RTCCNSRGFE  120
CDTHVRSTWV PAARRRERLQ LAGGASPPPA APAVAKKPRL ACQTATTTTN SRTSTSNATT  180
PRSLDTSSSH QGNHIIGRHQ LSTIAYSDTI QERSLSHRFP SSSADALFKG NLPRQVRGPA  240
VFRCVRVTSV DDGGGGNGHG EVAFKGNLPR QVRGPAVFRC VRVTSVDDGG GGNGHGEVAY  300
QAAVTINGHL FRGLLYDHGA DTDGRAAAAV QLGTSDLHLG SASAAAPNLY SGASAPLILG  360
GLGYGNTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390927e-66BT039092.1 Zea mays full-length cDNA clone ZM_BFb0370H22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962238.11e-144protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_022680709.11e-144protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1E5WDD10.0A0A1E5WDD1_9POAL; Uncharacterized protein
STRINGPavir.Cb01442.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-31Lateral root primordium (LRP) protein-related