PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do024006.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 311aa MW: 36260.6 Da PI: 6.3162

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024006.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	237.8	4.8e-73	7	302	74	373
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++e l+a+ ++ ++ +++ N +I++a++g + v i+D+++++G+QWp+L++ +a+ ++gpp++RiTg++ p++g + ++eetg+rL+k A+ Do024006.1 7 VVEYLKAYWMYRAACCHKMMAFRFSNMTIYKAIAGRKLVYIVDYGLNYGFQWPNLFRRMATWEGGPPEVRITGIDLPQPGfhPAARIEETGRRLSKCAH 105 6677888999999999999999*******************************************************999************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++++pf ++++ ++++L+++p+E+l+Vn++l+ +l+de v+++s +rd vL+ +++++P+v+++ + +++++ F+ rf eal +ys++ Do024006.1 106 QFDMPFMWETV--------TIDDLDIDPDEVLIVNSILHFGNLMDEGVDTSSpsPRDVVLSNIRKMRPDVFILFVMNGSYSTPYFVPRFREALFHYSTM 196 **99995........88999******************999888779**************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 fd+++a+ pr+s+ r+ vErel+g+ ++nv+aceg +r+er et+++W++r ++aG+k+++l+++++k+++ +r + + + ++++l+ gW +r Do024006.1 197 FDMMDATTPRDSDLRNLVERELFGQCAQNVIACEGLDRVERPETYKQWQRRNHRAGLKQLRLDQDIVKDVREKVRDKFHEDFVTDVDHQWLLGGWTGRI 295 **********************************************************************9888788************** PP GRAS 367 LvsvSaW 373 L+++S W Do024006.1 296 LYAMSTW 302 ***** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.121	1	283	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-70	7	302	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAERISVVEY LKAYWMYRAA CCHKMMAFRF SNMTIYKAIA GRKLVYIVDY GLNYGFQWPN 60 LFRRMATWEG GPPEVRITGI DLPQPGFHPA ARIEETGRRL SKCAHQFDMP FMWETVTIDD 120 LDIDPDEVLI VNSILHFGNL MDEGVDTSSP SPRDVVLSNI RKMRPDVFIL FVMNGSYSTP 180 YFVPRFREAL FHYSTMFDMM DATTPRDSDL RNLVERELFG QCAQNVIACE GLDRVERPET 240 YKQWQRRNHR AGLKQLRLDQ DIVKDVREKV RDKFHEDFVT DVDHQWLLGG WTGRILYAMS 300 TWAAADAVLE S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-26	4	302	70	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021316530.1	0.0	scarecrow-like protein 34
Refseq	XP_021316531.1	0.0	scarecrow-like protein 34
TrEMBL	A0A1Z5RL63	1e-177	A0A1Z5RL63_SORBI; Uncharacterized protein
STRING	Pavir.Ha00318.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.2	5e-99	GRAS family protein