PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023900.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 379aa MW: 40467.9 Da PI: 6.6546

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023900.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.2e-10	183	241	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l+se+ Do023900.1 183 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTTGLTSEN 241 9***********************************************99998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-17	179	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.921	181	244	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-9	183	238	No hit	No description
Pfam	PF00170	2.9E-9	183	241	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-11	183	235	No hit	No description
CDD	cd14703	7.86E-23	184	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MNKDKAPMQG DGSSGAGLPP PATPPAGAPP SSSTRPPECD ISRMSDVPTR NAGHRRAHSE 60 ILSLPDDLDL SAAGGGDGPS LSDENDEELF SMFLDVDKLN SSCGASSEAE AESSSAAGGG 120 GEGVELGHAP RPRHQHSQSM DESMSMKAEQ LVGAPGMEGM SSAEAKKAVS AAKLAELALV 180 DPKRAKRIWA NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLALL QRDTTGLTSE 240 NSELKIRLQT MEQQVHLQDA LNDTLKSEVQ RLKVATGQVS NGGGGMMMNF GAMPRPFGGN 300 QQMFHNNQAM QSMLATQQXQ QLQLHSQPQQ QALHPQHQQQ PLHPLQAQQL QQAARDLKMK 360 GHLGSQGQWG DGKSGSSGS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MNKDKAPMQG DGSSGAGLPP PATPPAGAPP SSSTRPPECD ISRMSDVPTR NAGHRRAHSE  60
ILSLPDDLDL SAAGGGDGPS LSDENDEELF SMFLDVDKLN SSCGASSEAE AESSSAAGGG  120
GEGVELGHAP RPRHQHSQSM DESMSMKAEQ LVGAPGMEGM SSAEAKKAVS AAKLAELALV  180
DPKRAKRIWA NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLALL QRDTTGLTSE  240
NSELKIRLQT MEQQVHLQDA LNDTLKSEVQ RLKVATGQVS NGGGGMMMNF GAMPRPFGGN  300
QQMFHNNQAM QSMLATQQXQ QLQLHSQPQQ QALHPQHQQQ PLHPLQAQQL QQAARDLKMK  360
GHLGSQGQWG DGKSGSSGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959949	0.0	EU959949.1 Zea mays clone 220819 transcription factor RF2a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804457.1	0.0	transcription factor RF2a-like
Swissprot	Q69IL4	1e-154	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A1E5VIM0	0.0	A0A1E5VIM0_9POAL; Transcription factor RF2a
STRING	Pavir.J04459.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	9e-59	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]