PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023875.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 386aa    MW: 40830.3 Da    PI: 9.0203
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023875.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.4e-4293169278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC adls+ ++yhrrhkvCe+hsk+pvv+vsg++qrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  Do023875.1  93 CSVDGCPADLSKGRDYHRRHKVCEAHSKTPVVTVSGQQQRFCQQCSRFHSLGEFDETKRSCRKRLDGHNRRRRKPQP 169
                 **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3485154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1290167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.01E-3991172IPR004333Transcription factor, SBP-box
PfamPF031103.7E-3293166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEWDAKTLPA WDLGTVVDPS SRGGVEIVAA AGAGVGGALD LKLGGPTSWR AVTTAPAAAS  60
LPSPPAPPRP SSSSSAPAKR PRPGQAQQAV PACSVDGCPA DLSKGRDYHR RHKVCEAHSK  120
TPVVTVSGQQ QRFCQQCSRF HSLGEFDETK RSCRKRLDGH NRRRRKPQPD PLNPGGLFGN  180
HHGVARFASY QQLFASSMAE PKWPVVKTEA DVFQDQYYPT VHLSGAGSLF HVKDQKHFPF  240
LTNHRHGSDA AGAFGSQPFT ITTASSESSS KQSNSNCALS LLSDNPTPAQ TTTMIPTAEP  300
LGAGLQYGSV ARLPDGGDVS LTGMSYARVG DSKQASILTT SSSHTAVASP GPSMQLQYHG  360
YYHVSGGDQG NNSDGATIQA LPFSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-31931661184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KRPRP
2149166KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023875.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814120.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-116SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A2T7DCF30.0A0A2T7DCF3_9POAL; Uncharacterized protein
STRINGPavir.J02262.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-32SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]