PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023863.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 333aa    MW: 38124.6 Da    PI: 9.0663
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023863.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.44.5e-26200249352
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ++i+l+++ +yF+ pi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl
  Do023863.1 200 DSITLDEITQYFHIPIREASKTLQIGVSILKRKCRKYGIPRWPHRKIKSL 249
                 68**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.429184269IPR003035RWP-RK domain
PfamPF020429.2E-22201249IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDMDAAVSTL TALSIFASTV EHAAFRSVHG YRVIGRKDGK WVRWERWMER QFVLSLSAPP  60
CLEVPVPAAS PRILLAGWRG RPVFREGQTV GTWRCIVAFD SVAAVAPSSP PPPVLSPSVN  120
PQLECLPNLY RDLQKVFQFQ KVEKVPKRDA KEQPVHSGEQ EKTSDEADSS EYDSDGDPQS  180
DKELVPPVQK KPRANRKHID SITLDEITQY FHIPIREASK TLQIGVSILK RKCRKYGIPR  240
WPHRKIKSLD SLIHDLEYVL DDEQEDAQQE LQKIEEQKQA AAKTALTKRK KMLESEKEII  300
QQKPALDLMT ETKQFREDVF KRRYRAKSAV MEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976506.10.0protein RKD5
TrEMBLA0A1E5UTZ80.0A0A1E5UTZ8_9POAL; Uncharacterized protein
STRINGPavir.Ga01021.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-32RWP-RK domain-containing protein