PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 25416.9 Da PI: 10.0875 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.7 | 2.1e-14 | 128 | 204 | 2 | 78 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknrat 78 p G+rF+Pt+eel+ +yL+ k +g + +++ +++kevd+y+v+ ++ ++ + ++ + wy Fs+r++ky++gkr+ r++ Do023815.1 128 PSGVRFKPTNEELI-FYLRLKHAGVQkMPV-DFFKEVDVYHVHQETTKAlCGESLNGYWYVFSPRNRKYKNGKRPARSV 204 79************.999999888773666.99**********999985244444559******************953 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-14 | 121 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.374 | 127 | 233 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-6 | 128 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQTTPLVLVQ TTSVEPSYYR QTQGAAASAA TKAVIVHEDP DTHKAQESTK PAPRKTAAAK 60 LVFEPPKRAV APSNQAASPR TASVTDPATM AGQVQVHEPE QAGSVVAVAA ADQIAPCTKS 120 MALLYTSPSG VRFKPTNEEL IFYLRLKHAG VQKMPVDFFK EVDVYHVHQE TTKALCGESL 180 NGYWYVFSPR NRKYKNGKRP ARSVFEARGE QVAIGSPTPS WRLYSSVAKM TAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5UZZ3 | 1e-171 | A0A1E5UZZ3_9POAL; Uncharacterized protein | ||||
STRING | Si039443m | 1e-59 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 9e-15 | NAC family protein |