PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023798.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 529aa    MW: 58560.4 Da    PI: 9.2076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023798.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-06101121926
                 GGGTS...--TTTTT-SS-SS CS
     zf-CCCH   9 fartG...tCkyGdrCkFaHg 26 
                  artG   tC +G rC++aHg
  Do023798.1 101 QARTGaapTCVRGLRCRYAHG 121
                 58999999************9 PP
2zf-CCCH17.85.8e-063753931126
                 GTS...--TTTTT-SS-SS CS
     zf-CCCH  11 rtG...tCkyGdrCkFaHg 26 
                 rtG   tC +G rC++aHg
  Do023798.1 375 RTGeaaTCARGLRCRYAHG 393
                 788888************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.183122IPR000571Zinc finger, CCCH-type
SMARTSM0035626131154IPR000571Zinc finger, CCCH-type
SMARTSM003563.3355394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEMSCMAGCQ QRVWGDGARF SDPRTWDPSV HIGHRLWAAM SDAFWVFVYK VRRCRQVSSH  60
DWTTCPYAHK GERARRRDPR SFSYLAMTCP EYLASKQTQQ QARTGAAPTC VRGLRCRYAH  120
GVFEYWLHPT RFRTVMCEAG LRCRRRVCFF AHSPAELRGA NDPVPLVGMP PPPPPLYAPR  180
APAPSFPRRV DRILQATPGR NNLRLLHNGD GASSSSSPSP AAAVAVATAA APVPALPQAS  240
PDGEDAGGKK SGGGASDDED GSVAGDYPHF DLISDMVNWY RRLTASSGGA HPSDPTTWYA  300
WAHRGHRLWA LMPDAFWVYV YKVHPCPTLS SHDWTTCPYA HEGERAARRD PRSFAYLAMA  360
CAEYRKSQQH HHNARTGEAA TCARGLRCRY AHGVFETWLH PAKFRTVTCE AGAWCRRQVC  420
FFAHFPAELR RENDPVLLAA LPPPPARATP APAPLSSPRR VDSVVLHPMP GKLDDHDAGA  480
SSSSPSPAAA VAVAMADDED AGDRIDDFFA LLGFLKKTIT KIRPRFKKW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253GGKKSGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801803.15e-87zinc finger CCCH domain-containing protein 10-like
TrEMBLA0A1E5VXR80.0A0A1E5VXR8_9POAL; Zinc finger CCCH domain-containing protein 54
STRINGPavir.Ba00185.1.p6e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1118956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-38C3H family protein