PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ARF | ||||||||
Protein Properties | Length: 661aa MW: 72605.1 Da PI: 7.4039 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.4e-25 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ ++d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ +++++ l Do023795.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLVKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTENGDL 206 89****************************996555555..8************************************************..4588999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ Do023795.1 207 CVGIRRA 213 ****997 PP | |||||||
2 | Auxin_resp | 115.5 | 4.7e-38 | 270 | 352 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++ a +++ FevvY+Prast+eF+vk+ v++a+++++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWpnS+Wr+L+ Do023795.1 270 SKLAVSGQHFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSGVQVADPIRWPNSPWRLLQ 352 5678899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-38 | 104 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-29 | 107 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.92E-21 | 111 | 212 | No hit | No description |
SMART | SM01019 | 8.0E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-23 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-33 | 269 | 352 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.706 | 587 | 661 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MERERESDKC LDPQLWHACA GGMVQMPPVH SKVYYFPQGH AEHAQGAVDL PAGRGPALVL 60 CRVAAVRFMA DPDTDEVFAK IRLAPVRPNE PADADDAIAA AAGAQEDKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVLVKDVHGV VWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL VAGDSIVFMR TENGDLCVGI RRAKKGSIGG PEFLHQPPLS GGNYGGFSMF 240 LRGEEDGNKM MATRGKVRVR VRPEEVVEAS KLAVSGQHFE VVYYPRASTP EFCVKAGAVR 300 AAMRTQWCAG MRFKMAFETE DSSRISWFMG TVSGVQVADP IRWPNSPWRL LQVAWDEPDL 360 LQNVKRVSPW LVELVSNMPA IHLSPFSPPR KKLCVPLYPE LPLEGQFPTP MFHGSPLGRG 420 VGPMCCFPDG TPAGIQGARH AQFGISLSDL HFNRLQSSLS PHGLHQLDHG MQLRIAAGLL 480 IGHPAARDDV SCLLTIGTPQ NKKSDVKKAA PQLMLFGKPI LTEQQITLRN AAGFPLAAEK 540 KSPSDSNAEK PVSNSDISSP GSNQDGTSSG EVPLCQDNKV LDLGLDTGPC KVFMKSEDVG 600 RTLDLSDVIS YEELYQRLAD MFDIEKAELM SHVFYCDASG ALKHTGDKPF RFVWFWIEFL 660 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-79 | 11 | 373 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023795.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727965 | 0.0 | KJ727965.1 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966255.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_004966256.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1E5VBB6 | 0.0 | A0A1E5VBB6_9POAL; Auxin response factor | ||||
STRING | Si005991m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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