PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023795.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 661aa    MW: 72605.1 Da    PI: 7.4039
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023795.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.4e-25112213199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+ ++d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +++++ l
  Do023795.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLVKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTENGDL 206
                 89****************************996555555..8************************************************..4588999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  Do023795.1 207 CVGIRRA 213
                 ****997 PP
2Auxin_resp115.54.7e-38270352283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 ++ a +++ FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWpnS+Wr+L+
  Do023795.1 270 SKLAVSGQHFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSGVQVADPIRWPNSPWRLLQ 352
                 5678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-38104218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29107214IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-21111212No hitNo description
SMARTSM010198.0E-22112214IPR003340B3 DNA binding domain
PfamPF023626.9E-23112213IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366112214IPR003340B3 DNA binding domain
PfamPF065073.6E-33269352IPR010525Auxin response factor
PROSITE profilePS5174516.706587661IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MERERESDKC LDPQLWHACA GGMVQMPPVH SKVYYFPQGH AEHAQGAVDL PAGRGPALVL  60
CRVAAVRFMA DPDTDEVFAK IRLAPVRPNE PADADDAIAA AAGAQEDKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVLVKDVHGV VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFMR TENGDLCVGI RRAKKGSIGG PEFLHQPPLS GGNYGGFSMF  240
LRGEEDGNKM MATRGKVRVR VRPEEVVEAS KLAVSGQHFE VVYYPRASTP EFCVKAGAVR  300
AAMRTQWCAG MRFKMAFETE DSSRISWFMG TVSGVQVADP IRWPNSPWRL LQVAWDEPDL  360
LQNVKRVSPW LVELVSNMPA IHLSPFSPPR KKLCVPLYPE LPLEGQFPTP MFHGSPLGRG  420
VGPMCCFPDG TPAGIQGARH AQFGISLSDL HFNRLQSSLS PHGLHQLDHG MQLRIAAGLL  480
IGHPAARDDV SCLLTIGTPQ NKKSDVKKAA PQLMLFGKPI LTEQQITLRN AAGFPLAAEK  540
KSPSDSNAEK PVSNSDISSP GSNQDGTSSG EVPLCQDNKV LDLGLDTGPC KVFMKSEDVG  600
RTLDLSDVIS YEELYQRLAD MFDIEKAELM SHVFYCDASG ALKHTGDKPF RFVWFWIEFL  660
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-791137351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279650.0KJ727965.1 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966255.10.0auxin response factor 18
RefseqXP_004966256.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1E5VBB60.0A0A1E5VBB6_9POAL; Auxin response factor
STRINGSi005991m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]