PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023745.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 488aa    MW: 54815.1 Da    PI: 5.1983
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023745.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.4e-1481128249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                  i+n+  r++tf kRr+g+ K A  LS+L++a++a+ + s+tgk+  +
  Do023745.1  81 YIKNDNSRSITFFKRRAGLYKAAADLSTLTGARIAIALESETGKMSSF 128
                 59*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.63372132IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-1272131IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-1673142IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-87494IPR002100Transcription factor, MADS-box
CDDcd002661.21E-1674140No hitNo description
PfamPF003193.6E-1682128IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-894109IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-8109130IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MFAFGAPSAG NIIDSFLSGN TMEDPIPNDE AQKAKIIYLQ IELIRLEKLK DVQDRRTWES  60
MAHSREIQES SMWPRRSGIS YIKNDNSRSI TFFKRRAGLY KAAADLSTLT GARIAIALES  120
ETGKMSSFGT PSAGPIIDSF LSGNTPVDPF VNEEEKAKIT LLQNEIFKVE KDKFMEDKRT  180
KEAIARAKET QETSRKAKLV YGKIHDLSVE ELNELVHDFS EVQQEIDDLL QPQQPSCPLE  240
VDGSRDPSHQ WLSSSSSHSQ IQLPPRRLPW TPIQPSLQLP RSSWSLPQWS RSQSSFLNNP  300
SLLPSAQAQP TPLFQHSLMP LHPSEVQPQA EMILPPTETY QHNYNTQRVH SNGNISQPFS  360
QSFLMPALPP PPPFYTEFPP PSSSQQLPTP LPTEAEFHLA EQPENQANTQ DFTAACHPFA  420
NHQWPSPIPS NEPYFDINLY GLNLHLGDHG YPGGHQVTGE HDMPGPSGLH QQASDCPYRN  480
FFESSSEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958932.11e-161uncharacterized protein LOC101780877
TrEMBLA0A1E5W9710.0A0A1E5W971_9POAL; Uncharacterized protein
STRINGSi032862m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-12AGAMOUS-like 62