PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023653.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 775aa    MW: 81714.1 Da    PI: 5.9422
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023653.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.91.7e-27545594251
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                 ek++sle+l++yFs+ +kdAA++Lgvc+T++KriCRq+GI+RWP+Rki++
  Do023653.1 545 EKTVSLEVLQQYFSGCLKDAARSLGVCPTTMKRICRQHGISRWPFRKIAK 594
                 799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.518530615IPR003035RWP-RK domain
PfamPF020424.3E-24547594IPR003035RWP-RK domain
SuperFamilySSF542778.5E-19667737No hitNo description
PROSITE profilePS5174518.616670763IPR000270PB1 domain
SMARTSM006667.1E-18670763IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.0E-22671737No hitNo description
CDDcd064072.57E-31671762No hitNo description
PfamPF005641.0E-12671740IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MVVEMEMEAH MDGVLQSFDL LLDGDRDGHG PCESFGAAAV DGSVSERRQP ADGCFRGSVR  60
ERAGGSDRSR SGSGGGGGGG GPATEGKEAT GGGAVKERIA RALRIYKDAA GGDGGGALVQ  120
VWAPARDGGR RVLATRGQPF VLAPPQCHRL FQYRTVSLTH AFPVGGAGVP GERGLPGRVF  180
DAGVPEWTPN VQYYGTGEYA RISYALIYDI QAALVLPILD PGTGSCVAVI ELVTTSPRLR  240
FADEVDKLSN ALQAVALRGS EICRPAPELC NDEAAELAMS EVSDILNTVG EAHRLPLAQA  300
WVRCKRCNAR AGQASLTAAG APFYVANADE SLRGFREACV EHHLRHGRGG LVEEAAAARG  360
PRLCGDVTKY SMDAYPLAHH ARFCGLAGCL AVCVQLRRDD DASMDDGSLE ECVLEFFLPP  420
DCRDGAVQKA AADAVAATIM ERFGSGHLKA IVISGLQDLV FEIVADGECM LRSDTVIMAD  480
APELELNDDH GGDERDSVED GLHLAAGVGT ADIEAPKMNS GDRNGGEDPR SQVGEKKKKT  540
KRKGEKTVSL EVLQQYFSGC LKDAARSLGV CPTTMKRICR QHGISRWPFR KIAKANRSLD  600
KIKRVFEAVP GSSKPMPVST PAAVSRRDHA LPCQSSALGM ASSQGSCHAP PPPSKEAALR  660
PPSHGGEAGV VTVKASHRGD IIRFRVPSSA GVATVKGEVA KRLGLEASEF DVKYLDDDNE  720
WVLLSCDADF QECLDVVPAL SGASTSSGSG AAPPVVRLMV QEVAEIHGSS CGSSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681074.10.0protein NLP3
TrEMBLA0A1E5V1F20.0A0A1E5V1F2_9POAL; Protein NLP6
STRINGSi016430m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-138Nin-like family protein