PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023633.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 303aa    MW: 31699.3 Da    PI: 7.7681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023633.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.9e-14127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
       Do023633.1 127 PWSEEEHRQFLAGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKF 171
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.013120176IPR017930Myb domain
SuperFamilySSF466894.41E-17121177IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17123175IPR006447Myb domain, plants
SMARTSM007177.9E-11124174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-11124167IPR009057Homeodomain-like
CDDcd001679.03E-10127172No hitNo description
PfamPF002498.6E-11127170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPRKCSHCGN YGHNSRTCGL GHREIMLCDG GGGVGGGGGG LRLFGVQVHV GSSGGGAGGS  60
ASSMKKSYSM DCLQLAAPGC SLVSPTSSSS SSLLLSIEEG LERATTNGYL SDGPHGRVVA  120
ERKKGVPWSE EEHRQFLAGL EKLGKGDWRG ISRNYVTTRT PTQVASHAQK FFLRQSSMGK  180
KKRRSSLFDM VGISAAFHTQ VPICENSASI SDPMSSEGAS TSLSLNVPCH ERSERTAFDL  240
NSTEEDDSRA DVSSASGAGT RPFPAAPTEP QQPCHHGPAG HGHHCSPLDL ELGMSLSTPS  300
IGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794481e-149HF679448.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB42 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819826.11e-131transcription factor MYBS3-like
TrEMBLA0A1E5UU800.0A0A1E5UU80_9POAL; Transcription factor DIVARICATA
STRINGPavir.Ea02123.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-47MYB_related family protein