PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023613.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 286aa    MW: 30652.5 Da    PI: 8.9537
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023613.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.34.1e-232798171
    trihelix  1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                rWt++e+l+Li+arr me+r  +   +  p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k 
  Do023613.1 27 RWTRHETLVLIQARRAMERRGLQlPVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKL 98
                8******************9988355789****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1312085IPR017877Myb-like domain
SuperFamilySSF466897.18E-52486IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-42784IPR009057Homeodomain-like
PfamPF138372.1E-102795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMSANENSPL VEAAAAAAST PRSRLPRWTR HETLVLIQAR RAMERRGLQL PVRPRPKWAA  60
VSAYCRRHGV ERGPMQCRKR WGNLSWDLKK IVAWEGKLAS AGPGAGADAA PQHESFWDMC  120
GEQRRARQLP SSFDREVYDA LVCGTSAGGE DATAAALPDL GDGELDGVYR QPPIMVMPIS  180
VTESNKKAGA AASDKNSTSH GGGSGGLKDS DATFVAEAEG TTTATPAATV SIGKQVIEAL  240
ERSNRELAQQ LEAQKSSWRV DREQRAALLG ALDRLAGAVA RIADQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280310.0KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819294.11e-156trihelix transcription factor ASR3-like
TrEMBLA0A1E5UK670.0A0A1E5UK67_9POAL; Trihelix transcription factor ASR3
STRINGPavir.J28928.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-37Trihelix family protein