PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023576.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 605aa MW: 65129.9 Da PI: 6.8328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.6e-16 | 356 | 402 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Do023576.1 356 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 402 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.54E-17 | 349 | 406 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-20 | 350 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-13 | 356 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-20 | 356 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
LLWENGQAVI HGRRKQHQTS FPPFTCGAAS SSRAQEKQPG SDPVALLKTG GVFGGSGLAP 60 SVHDFSSGLD ATRDNGDLDD TVPWIHYPII EEDSAEPALA DSYSPDFFSE LHAAATNLSS 120 LPPPIQHINI NRSTPVATTS REPEPSKESH RIPIPGPANN RPEPQAEFTA TKQPRLGGGG 180 EGLMNFSLFS RPAAMARASL QSAQRPTQTG TDKASNVTTS TRVESTVLQS ASGQRTAPVF 240 TDHQRTAWSQ PKEVRFSCTA APTAVNLQQE MPRDRLGNMT LQKKVETRKA PEAAVATSSV 300 CSGNGAGIGN DEPWRQHKRK SQAECSASQD DDLEDESAGM RRSGSRGTKR SRTAEVHNLS 360 ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMSM GSGLCIPPML 420 LPPTLQHLQM PPIAHFPHLG MGLGYGMGVF DMNSTAAVPF PPMPGAHFPC SMIPGTPPQG 480 LGMPGRNTMP MFGLPGQAIH PSASSVQPFS SLVGLPLRPN LPPQVSAAMA NMVQEQQQGI 540 ATQQQQNLNS EARQGENTGD PELQTILQLE NQHFSVPSSA QTESGQFLDS AGNRTDTAGR 600 NGAET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 360 | 365 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023576.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682498.1 | 0.0 | transcription factor APG isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A1E5VW10 | 0.0 | A0A1E5VW10_9POAL; Transcription factor APG (Fragment) | ||||
STRING | Si000700m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-46 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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