PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023573.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 541aa MW: 60014.7 Da PI: 6.6412

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023573.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.6	9.6e-12	213	242	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Do023573.1 213 AKTERRLAQNREAARKSRLRKKAYVQQLET 242 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-5	210	286	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	212	254	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-9	213	243	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	214	255	No hit	No description
SuperFamily	SSF57959	4.26E-7	214	256	No hit	No description
PROSITE pattern	PS00036	0	217	232	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-28	294	369	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
LQPAATAYYG ELEEALIHGT CTSIDPSMIG SDVDTECKNK TAFSTTPLSF NPNLNHLREG 60 LLSLPPFPQH HRERAVEKTF NSICMYAAAG YLAARPPTLE IFPSWPMNHL QQPYSVSTGS 120 ISSFTGNSHS VGSTTDSSSG QNAMPQAELV SPGSMRADSG QQQEVLMVTV DDYNYEEGLG 180 AAATTAPIFQ QHTADQDRRK HGSTRKEGKL LDAKTERRLA QNREAARKSR LRKKAYVQQL 240 ETSRIRLQQI EQELHGARSQ GLFPGGGSAS GDMSSGAMMF DMEYARWLED DSKHMIELQG 300 ALQAQIMDAN LVGIVEECMR HYDELFHLRA MLARADVFHL MTGLWATAAE RCFLWMGGFR 360 PSEIIKMLIP QLDPLTEQQT LGMCNLQRSS EQTEEALAQG LQQLHQSLAE AVGTSPLSDG 420 ANVANYTALM ALALDRLDTL ESFYRQRVLP SVTFPLKLPI MQADNLRQQT LHHMRRLLTT 480 RQAARCFLSV GEYHRRLRAL SSVWASRPRE SFVAAAENVS PSGTAAEQAV HPYHQSQFSG 540 L

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

LQPAATAYYG ELEEALIHGT CTSIDPSMIG SDVDTECKNK TAFSTTPLSF NPNLNHLREG  60
LLSLPPFPQH HRERAVEKTF NSICMYAAAG YLAARPPTLE IFPSWPMNHL QQPYSVSTGS  120
ISSFTGNSHS VGSTTDSSSG QNAMPQAELV SPGSMRADSG QQQEVLMVTV DDYNYEEGLG  180
AAATTAPIFQ QHTADQDRRK HGSTRKEGKL LDAKTERRLA QNREAARKSR LRKKAYVQQL  240
ETSRIRLQQI EQELHGARSQ GLFPGGGSAS GDMSSGAMMF DMEYARWLED DSKHMIELQG  300
ALQAQIMDAN LVGIVEECMR HYDELFHLRA MLARADVFHL MTGLWATAAE RCFLWMGGFR  360
PSEIIKMLIP QLDPLTEQQT LGMCNLQRSS EQTEEALAQG LQQLHQSLAE AVGTSPLSDG  420
ANVANYTALM ALALDRLDTL ESFYRQRVLP SVTFPLKLPI MQADNLRQQT LHHMRRLLTT  480
RQAARCFLSV GEYHRRLRAL SSVWASRPRE SFVAAAENVS PSGTAAEQAV HPYHQSQFSG  540
L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023573.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961926.1	0.0	transcription factor TGAL5 isoform X1
Refseq	XP_022680634.1	0.0	transcription factor TGAL5 isoform X1
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A1E5VIZ9	0.0	A0A1E5VIZ9_9POAL; Transcription factor HBP-1b(C38) (Fragment)
STRING	Si022106m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-112	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]