PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023496.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 352aa    MW: 36576 Da    PI: 6.7937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023496.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.68e-202873147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT eEdell +av+++G+++W+ I+ +++ gR++k+c++rw + 
       Do023496.1 28 KGSWTHEEDELLRRAVTRHGPRNWSVISGEIP-GRSGKSCRLRWCNQ 73
                     799*****************************.***********985 PP
2Myb_DNA-binding605.1e-1980124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eEde +v +++q+G++ W+tIar++  gRt++++k++w++ 
       Do023496.1  80 RRPFTPEEDEVIVALHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 124
                      679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.1042378IPR017930Myb domain
SuperFamilySSF466898.61E-3125121IPR009057Homeodomain-like
SMARTSM007171.0E-152776IPR001005SANT/Myb domain
PfamPF002492.5E-182873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-242981IPR009057Homeodomain-like
CDDcd001673.90E-153072No hitNo description
SMARTSM007177.2E-1679127IPR001005SANT/Myb domain
PROSITE profilePS5129420.86680129IPR017930Myb domain
PfamPF002492.9E-1580124IPR001005SANT/Myb domain
CDDcd001671.85E-1282125No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2482127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVAPSGAGDG GLAAGSGGGG GGTAGRVKGS WTHEEDELLR RAVTRHGPRN WSVISGEIPG  60
RSGKSCRLRW CNQLSPGVER RPFTPEEDEV IVALHAQYGN KWATIARMLH GRTDNSVKNH  120
WNSTLRRHRR AAAAAANAAG VVGCALPLRA AAVVSGSPAP LRHLLAADPK EPSPVASLVP  180
FQPLDLRRDD DGDEDDEDEE DEDGSSEDSV LTPPPKKRPC VGIGAGQTHP SSLGVAKKPE  240
HTMPHPPTQP APAEPLTSLT LSLPGGGGGA VPETPAPHAA AAAMASMDGA AKMRAKLEQD  300
WPWLLTVMRQ MIGEEVQRHL QGLILPCSLV ASPAGRSSAG AADGSAAAKG QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-34271273103C-Myb DNA-Binding Domain
1msf_C2e-34271273103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698541e-111EU969854.1 Zea mays clone 336503 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809452.11e-125transcription factor MYB77-like
TrEMBLA0A1E5UV710.0A0A1E5UV71_9POAL; Transcription factor MYB44
STRINGSi024344m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-53myb domain protein 77