PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023484.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

SBP

Protein Properties

Length: 416aa MW: 42320.4 Da PI: 10.1398

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023484.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	149	225	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+++l+ akeyhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefD+ krsCrrrLa+hnerrrk++ Do023484.1 149 RCQVEGCHVELAGAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAISEFDDVKRSCRRRLAGHNERRRKSN 225 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-33	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.197	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.67E-38	148	227	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.5E-32	150	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
LPHHTVIAAG RRKRRHDVAM EGNGGGGGGS GSGSAAPPWD LGMHWAPAAG SSYPQQPIVP 60 RPGGGAATSH YQQQQQELTC LKLGAKRPCC WAGAAGSQVA QAGAGLPLAY SNAYSNGGAG 120 AGGAGGTAAE CSRRKEKASG AGAAAAVARC QVEGCHVELA GAKEYHRRHK VCEAHSKAPR 180 VVVLGAEQRF CQQCSRFHAI SEFDDVKRSC RRRLAGHNER RRKSNASEAM ARGTAHPHGV 240 PPFGHGFLPP CGLPASPAGA LSLLSSARGA AGAPWLAPAA PDISARSSAA LDELIAENRA 300 ALLAWQFFSS SDRSAAGRHL APPSAAGRAL LPPTDPAAGW HHAHNGRYYH AAPAGAGHTT 360 LDLMQTAAAT TTVASAGAAF RPVPGRAAAR PPKTEYGDAT GCSAAAWAPA GGARAL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

LPHHTVIAAG RRKRRHDVAM EGNGGGGGGS GSGSAAPPWD LGMHWAPAAG SSYPQQPIVP  60
RPGGGAATSH YQQQQQELTC LKLGAKRPCC WAGAAGSQVA QAGAGLPLAY SNAYSNGGAG  120
AGGAGGTAAE CSRRKEKASG AGAAAAVARC QVEGCHVELA GAKEYHRRHK VCEAHSKAPR  180
VVVLGAEQRF CQQCSRFHAI SEFDDVKRSC RRRLAGHNER RRKSNASEAM ARGTAHPHGV  240
PPFGHGFLPP CGLPASPAGA LSLLSSARGA AGAPWLAPAA PDISARSSAA LDELIAENRA  300
ALLAWQFFSS SDRSAAGRHL APPSAAGRAL LPPTDPAAGW HHAHNGRYYH AAPAGAGHTT  360
LDLMQTAAAT TTVASAGAAF RPVPGRAAAR PPKTEYGDAT GCSAAAWAPA GGARAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	140	223	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023484.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054654	1e-126	BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978167.1	1e-148	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-116	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A1E5UUX3	0.0	A0A1E5UUX3_9POAL; Squamosa promoter-binding-like protein 7 (Fragment)
STRING	Si010262m	1e-148	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-34	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]