PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023424.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 309aa    MW: 34006.4 Da    PI: 4.6002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023424.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13112157555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ++Er RR+++N+++  Lr+++P+      +K++Ka+iL+ A+eYI  Lq
  Do023424.1 112 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASILKDAIEYIERLQ 157
                 5689*********************7.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.152107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-14111161No hitNo description
SuperFamilySSF474592.88E-17111172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11112157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17113172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEMGDSYEYY WEMQRYFESE ELRYALAAAP AAIALGFGRD ADLNAMLGDC RCCSMYLGGA  60
QDDALSCYDS SSPDGSISNS SWAPAGKVTT ADDKRESTGA GAGAGAEGAN KNIIMERDRR  120
RKLNEKLYAL RSVVPNITKM DKASILKDAI EYIERLQAEE RQVLQEVRAL ETSAGGCAEE  180
RYDYEYDEGL LLQAERRKKP KRAQSVPSVI ADGAPVEVLE LRVSEVGERV LVVSVTCGKG  240
RDAMARVCRA VEELRLRVIT ANITSVAGCL MHTIFVEVDE VDRIEMKHTI EDALTRLDTA  300
GSPPSVMSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697841e-85EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279671e-85KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975236.11e-138transcription factor bHLH35
TrEMBLA0A1E5V0090.0A0A1E5V009_9POAL; Transcription factor bHLH35
STRINGPavir.Ga02255.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-53bHLH family protein