PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023394.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 321aa    MW: 35674.6 Da    PI: 4.4453
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023394.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57339.31.8e-12146234397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlv.eKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 fqr ws +De+  L ++     ++g+ p+   +a+   + +s++   s+  l+  K+r+LK+++    k+   g+    sk+hd+  f+lsk++Wg
  Do023394.1 146 FQRTWSTDDEVRXLEAMAAHCREHGTPPQP--EALLAALAGSLDNSGSSLALLqGKVRNLKRRYSLAAKR---GEL--PSKDHDRRLFDLSKSVWG 234
                 9*******************9****87655..68999999999988877665517*************99...554..5799*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.5E-19146234IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAAKRSAPQS PPPAASSEET ASGSGSEESE EEEEIAYSPP PAVTPKTKAP PPQKAQEYEE  60
DEEEGEEDDE EEEEEDEKAN HVAPPPAKKN PSPPPPNREE SETSGEEEEE ETDDEAPQPK  120
PAPNQEAEGK XAKPSSVEDK KPGAPFQRTW STDDEVRXLE AMAAHCREHG TPPQPEALLA  180
ALAGSLDNSG SSLALLQGKV RNLKRRYSLA AKRGELPSKD HDRRLFDLSK SVWGPVAAAN  240
GGARREVGEM CELYPYLAEE VRAVEKEYPG LFKREFEMID DDKARALDEK IKKQRRRQMR  300
VLQRRHDLTK EVTRTLIDLV D
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954058.21e-115uncharacterized protein LOC101755591
TrEMBLA0A1E5VAN90.0A0A1E5VAN9_9POAL; Uncharacterized protein
STRINGPavir.Aa00346.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-08DNA-binding storekeeper protein-related transcriptional regulator