PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023285.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 297aa    MW: 32324.4 Da    PI: 7.9297
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023285.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.4e-5061461128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                 lppGfrFhP+d+elv +yL++k++gk        ++ +vd++k+ePw+Lp ++  + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd+++  +  
  Do023285.1   6 LPPGFRFHPRDDELVLDYLCRKLSGKGggAYGGIAMVDVDLNKCEPWELPGEACVGGREWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRPISISgr 104
                 79************************9653333459999***********7666789**************************************9865 PP

         NAM  96 ....kgel.......vglkktLvfykgrapkgektdWvmheyrl 128
                     +          vg++ktLvfy+grap+g+kt+Wvmhe+r+
  Do023285.1 105 rgagG--GgagaaavVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 146
                 55550..05556666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-562173IPR003441NAC domain
PROSITE profilePS5100554.1476173IPR003441NAC domain
PfamPF023658.7E-267146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMEARLPPGF RFHPRDDELV LDYLCRKLSG KGGGAYGGIA MVDVDLNKCE PWELPGEACV  60
GGREWYFFSL HDRKYATGQR TNRATRSGYW KATGKDRPIS ISGRRGAGGG GAGAAAVVGM  120
RKTLVFYQGR APRGSKTEWV MHEFRVEGPA VAVADRPCSP LKEDWVLCRV FYKSRTTITR  180
PAGPDEAASL SGELIGLPLP HMPPADTYLG FDHAAVATIG GYYQQDDAGL LASHHQPTLP  240
HDKSLSSFRD LLSSMVEGND RGAAAKTELH QDWTEAAYAQ QQGGVLPQAW NPFLSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-49117612168NO APICAL MERISTEM PROTEIN
1ut4_B5e-49117612168NO APICAL MERISTEM PROTEIN
1ut7_A5e-49117612168NO APICAL MERISTEM PROTEIN
1ut7_B5e-49117612168NO APICAL MERISTEM PROTEIN
4dul_A5e-49117612168NAC domain-containing protein 19
4dul_B5e-49117612168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023285.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630310.0EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976831.11e-173NAC domain-containing protein 21/22
SwissprotQ84TE62e-71NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1E5W5850.0A0A1E5W585_9POAL; NAC domain-containing protein 21/22
STRINGSi010680m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.28e-70NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]