PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 434aa MW: 46066.4 Da PI: 5.2165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 247 | 291 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++Lr+llP++ K +K ++L A ++k L Do023267.1 247 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAASFLKTL 291 7899*********************9.....6999********9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-16 | 240 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.437 | 242 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-15 | 247 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-11 | 247 | 296 | No hit | No description |
Pfam | PF00010 | 4.2E-9 | 247 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-12 | 248 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDEVWCDLDL QQLQAGLHPA PGLHDHDPFW SALADCAASF LAGDTACFGV ADIDLSGSAA 60 SGNVVVDGMD TSGFFAENDD HHQLMPHQEQ QPVYSSSSLS SRRSLSIDSG GSSSTFFQLD 120 DAAPALAAAT AAKTHFTSPH SHPAAPSTTT QDPFAGEDEA IMRAMMAVIS SASPSSSESS 180 SPPLSQDTTA AQPAVQPPRL ISGASGASHV TVRSSSLGAV APERTTSLSS AASGGRQQEN 240 NSSQVYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV LINAASFLKT LEAQVSELEE 300 KNTKLERYVP REDGGAATAA THRRAKVHIS RAASDEQQVT LMVMVMVECD IVDLVLHVLE 360 CLRWMSGVSV LSVDADTYSP QALLKARAHI KLQIMDGDCW NEALFHEAMT KAVHDATSPS 420 LSSCAAPVPL VAAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 255 | ERKRRE |
2 | 251 | 256 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957084 | 1e-177 | EU957084.1 Zea mays clone 1582425 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969032.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A1E5UZ53 | 0.0 | A0A1E5UZ53_9POAL; Uncharacterized protein | ||||
STRING | Si001494m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10174 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-24 | bHLH family protein |