PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do023208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 148aa MW: 16192.2 Da PI: 9.0044 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43 | 9.7e-14 | 73 | 126 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r rk+kNR +A+rsR+R+ a++ eLe++v L aeN++L+k eelk+ +a+ Do023208.1 73 RRRERKMKNRDSAQRSRARRYAYVNELEKEVRLLRAENDELRKLCEELKEAAAE 126 7889*********************************************98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-7 | 69 | 133 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.312 | 71 | 122 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-11 | 73 | 124 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-12 | 73 | 125 | No hit | No description |
SuperFamily | SSF57959 | 6.06E-10 | 73 | 123 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 91 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MEPQWGEAEQ LVLWGAGTGS NDAAGAATCL CPATVAAAAP GTCVFPRHAL EQEMLRRADV 60 QLQGGGGGGG GDRRRERKMK NRDSAQRSRA RRYAYVNELE KEVRLLRAEN DELRKLCEEL 120 KEAAAEAPAR AKRAPHHHQL QRTSSASF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do023208.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974151.1 | 3e-33 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Swissprot | Q84JK2 | 5e-13 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1E5WE87 | 1e-102 | A0A1E5WE87_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00021.1.p | 4e-34 | (Panicum virgatum) | ||||
STRING | Si014546m | 7e-34 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15193 | 17 | 19 |