PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 30150.7 Da PI: 5.4138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 7.2e-10 | 207 | 248 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq Do023125.1 207 AKNRRERISERLRTLQELVPNG-----TKVDMVTMLEKAITYVKFLQ 248 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.218 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-13 | 200 | 252 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 200 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-13 | 202 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-12 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-7 | 207 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MALVREHSGY GGFDGADAFD ALGYGHDALL GFDAASLLGG GGSYAGAVAD GGNVWPGARA 60 SSVLAFDCAT AVTTVSGDEE ECDAWIDATD QSYGDAAAAP EERHALTASV GFDAATGCFT 120 LTERASSSGG AGRTFGLLFP STAAAAASPE RAAAPVRASQ KRTYVGVEPP LAAVSPNKKH 180 CGTGRKATTK VKSAPAIPTK DPQSLAAKNR RERISERLRT LQELVPNGTK VDMVTMLEKA 240 ITYVKFLQLQ VKVLATDEFW PAQGGKAPEI SQVREALDAI LSSASQRGEL N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109662 | 8e-99 | AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679441.1 | 1e-150 | transcription factor UNE12 | ||||
Swissprot | Q9C707 | 4e-52 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A1E5VS73 | 0.0 | A0A1E5VS73_9POAL; Transcription factor bHLH83 | ||||
STRING | Si019575m | 1e-149 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 9e-52 | ROOT HAIR DEFECTIVE6 |