PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 102aa MW: 12001.7 Da PI: 9.2796 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 87.8 | 1.8e-27 | 2 | 99 | 225 | 322 |
GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 d+vL+ +++++P+++++ + ++++ Fl+rf e l ++sa fd l+a++pr+s+er +Er ++gr++ nv+acega+r+er et+++W++r ++a Do023120.1 2 DQVLNNIRKMRPDMFIHGVINGAYGTTYFLTRFREVLFHCSAQFDLLDATVPRDSQERLLIERDIFGRAALNVIACEGADRVERPETYKQWQARNQRA 99 79******************************************************************************************997776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.257 | 1 | 102 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-25 | 2 | 99 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MDQVLNNIRK MRPDMFIHGV INGAYGTTYF LTRFREVLFH CSAQFDLLDA TVPRDSQERL 60 LIERDIFGRA ALNVIACEGA DRVERPETYK QWQARNQRAR LR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827844.1 | 3e-57 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 2e-37 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1E5UXB2 | 3e-70 | A0A1E5UXB2_9POAL; Scarecrow-like protein 9 | ||||
STRING | Pavir.J31658.1.p | 8e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37416 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 8e-40 | GRAS family protein |