PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 127aa MW: 14128.5 Da PI: 9.6374 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 100.9 | 1.9e-31 | 7 | 120 | 74 | 185 |
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++ l+a++lf ++ + k+++ N++I +a++g +++ i+D+++++G+QW+ Ll+ La+R++gpp+++iTg++ p++g + ++eetg+rL++ A+ Do023119.1 7 AIDFLKAYQLFMAACCCKKVAFTFSNKTIFDAFAGRHCLNIVDYGLGYGFQWLGLLRGLAARQGGPPEVKITGIDLPQPGfrPAYQIEETGRRLSNCAH 105 57899**************************************************************************99999*************** PP GRAS 171 elgvpfefnvlvakr 185 e+g+pf f+ ++akr Do023119.1 106 EFGMPFTFRGIAAKR 120 **********87764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.505 | 1 | 127 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.6E-29 | 7 | 120 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MLRRISAIDF LKAYQLFMAA CCCKKVAFTF SNKTIFDAFA GRHCLNIVDY GLGYGFQWLG 60 LLRGLAARQG GPPEVKITGI DLPQPGFRPA YQIEETGRRL SNCAHEFGMP FTFRGIAAKR 120 ETALLST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-14 | 4 | 119 | 88 | 197 | Protein SCARECROW |
5b3h_D | 2e-14 | 4 | 119 | 88 | 197 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023119.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827844.1 | 5e-68 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1E5UX64 | 3e-89 | A0A1E5UX64_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39141.1.p | 6e-70 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 3e-30 | GRAS family protein |