PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023038.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 817aa MW: 89754.9 Da PI: 6.3098

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023038.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	394.9	8.4e-121	441	810	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cA+ v+++d ++a+ lL++++++asp+gd qRla++f+++L+arla+++s++yk++ +++ + +++l+a++l+ ++P+ k+sh+ aNq Do023038.1 441 ETLLIHCAQSVATDDRRAATDLLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSVIMTRFP---CTDVLKAYQLYLAACPFKKISHFFANQ 536 789***********************************************************99999...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +Il+ave++++vHi+Df++ +G+QWp+L+q L++Rp+gpp+lR+Tg++ p++g +e++eetg+ L+++A++++vpfef++ +a+r+e++++e+L+++ Do023038.1 537 TILNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSTRPGGPPKLRMTGIDTPHPGfrPAERIEETGRYLKDYAQTFNVPFEFKA-IASRFEAVQIEDLHIE 634 ***********************************************99*************************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +ysa+fd+le+++pr++e+r +E +l+gre+ n Do023038.1 635 KDELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNPDVFIHGIINGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLLIESALFGREAIN 733 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v++ceg er er et+++W r ++aGFk++p++++++k + +r +++d + ++e++++l++gWk+r L+++S W+ Do023038.1 734 VISCEGLERMERPETYKQWAVRNQRAGFKQLPINQDIMKRTREKVRCYHKD-FIIDEDNKWLLQGWKGRILLALSTWK 810 *********************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.093	414	791	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-118	441	810	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MVMDAGLHEP CLLLPGSKRD AHLPIYPQVA AAAANGFTAE DLEALLFLPH DGIAAAAGGV 60 GGGYLNVAPT TVVPPASTNR AGASPPRKTA PATAPAAAGQ PDDSEAFSDI VLGYINRMLM 120 AEDIDDKFEH YPEHSALLAA EKPFLEILAE RPSSSGGSAV ESPDGSSVAN SCYSAGSCSC 180 AAAASDVFGA VLTPALDFPS AAFLQPPQLY QDLSPESSVV DAGAPWPYDP TEFYQLQTNP 240 VPEALLSQPP SFASSNGSGI ALSDGFESLL SSSGVMPDVG LTDFVVQSQQ AMQFCRGLEE 300 ASRFLPDESK LVIDLEKSAS ATSLLTNVKE EKRFVEVKAE KADVAGIHRG KKHFYGDDLD 360 AEEGRCSKHS ATPVDTDQLV REMMDKVLLC NGETCSKGVK ELREALQHDV AKHSHGGHGK 420 GSRHGKGRGK KQPKKEVVDL ETLLIHCAQS VATDDRRAAT DLLKQIRQHA SPNGDGDQRL 480 AHCFANGLEA RLAGNGSQIY KSVIMTRFPC TDVLKAYQLY LAACPFKKIS HFFANQTILN 540 AVEKAKKVHI VDFGVYYGFQ WPCLIQRLST RPGGPPKLRM TGIDTPHPGF RPAERIEETG 600 RYLKDYAQTF NVPFEFKAIA SRFEAVQIED LHIEKDELLI VNCMFKFKTL MDESVVAESP 660 RNMVLNTIRK MNPDVFIHGI INGSYNAPFF VSRFREALFH YSAIFDMLET NIPRDNEQRL 720 LIESALFGRE AINVISCEGL ERMERPETYK QWAVRNQRAG FKQLPINQDI MKRTREKVRC 780 YHKDFIIDED NKWLLQGWKG RILLALSTWK PDHKSSP

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MVMDAGLHEP CLLLPGSKRD AHLPIYPQVA AAAANGFTAE DLEALLFLPH DGIAAAAGGV  60
GGGYLNVAPT TVVPPASTNR AGASPPRKTA PATAPAAAGQ PDDSEAFSDI VLGYINRMLM  120
AEDIDDKFEH YPEHSALLAA EKPFLEILAE RPSSSGGSAV ESPDGSSVAN SCYSAGSCSC  180
AAAASDVFGA VLTPALDFPS AAFLQPPQLY QDLSPESSVV DAGAPWPYDP TEFYQLQTNP  240
VPEALLSQPP SFASSNGSGI ALSDGFESLL SSSGVMPDVG LTDFVVQSQQ AMQFCRGLEE  300
ASRFLPDESK LVIDLEKSAS ATSLLTNVKE EKRFVEVKAE KADVAGIHRG KKHFYGDDLD  360
AEEGRCSKHS ATPVDTDQLV REMMDKVLLC NGETCSKGVK ELREALQHDV AKHSHGGHGK  420
GSRHGKGRGK KQPKKEVVDL ETLLIHCAQS VATDDRRAAT DLLKQIRQHA SPNGDGDQRL  480
AHCFANGLEA RLAGNGSQIY KSVIMTRFPC TDVLKAYQLY LAACPFKKIS HFFANQTILN  540
AVEKAKKVHI VDFGVYYGFQ WPCLIQRLST RPGGPPKLRM TGIDTPHPGF RPAERIEETG  600
RYLKDYAQTF NVPFEFKAIA SRFEAVQIED LHIEKDELLI VNCMFKFKTL MDESVVAESP  660
RNMVLNTIRK MNPDVFIHGI INGSYNAPFF VSRFREALFH YSAIFDMLET NIPRDNEQRL  720
LIESALFGRE AINVISCEGL ERMERPETYK QWAVRNQRAG FKQLPINQDI MKRTREKVRC  780
YHKDFIIDED NKWLLQGWKG RILLALSTWK PDHKSSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-53	444	810	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023038.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970541.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1E5VF22	0.0	A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRING	Si000234m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein