PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do023022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 28162.8 Da PI: 5.7938 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.4 | 1.7e-15 | 89 | 135 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRdr+N +f Lr +P +++Ka+iLe Av YI++L Do023022.1 89 MSHVEAERQRRDRLNRRFCDLRAAVPRV-----SRMDKASILEDAVSYISEL 135 68*************************5.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.24 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-17 | 89 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.65E-4 | 89 | 140 | No hit | No description |
Pfam | PF00010 | 5.8E-13 | 89 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-16 | 90 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-14 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MDEFVWPAAS CGPLFPESCF SAVSHHQRPA LEFMPCHDVP EQWLLGDDVL DKHDNEEELQ 60 DGRAIQTPPA PLVERSRRKP GPRTDGSAMS HVEAERQRRD RLNRRFCDLR AAVPRVSRMD 120 KASILEDAVS YISELRGRVE QLEEAAAEAR RMTTASPLAH YALFGGSSDQ ENTALEARMI 180 GPEEAALHLT TTAARHAPAR LMAALRALDL PVQHACVCRL GGVTVQDVVV DVPSAGLRED 240 GRLRAALHGL LLQESG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_B | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_E | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_F | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_G | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_I | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_M | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_N | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 95 | 100 | RQRRDR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do023022.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT040679 | 1e-44 | BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds. | |||
GenBank | KJ726787 | 1e-44 | KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds. | |||
GenBank | KJ728281 | 1e-44 | KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974086.2 | 5e-76 | transcription factor MYC2 | ||||
TrEMBL | A0A1E5UYS1 | 0.0 | A0A1E5UYS1_9POAL; Uncharacterized protein | ||||
STRING | Si015513m | 2e-75 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-18 | bHLH family protein |