PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do022874.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YC

Protein Properties

Length: 221aa MW: 24506.2 Da PI: 4.2218

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022874.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	63.5	4.1e-20	32	130	3	98
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 fw k ie++++++nh+lPl+ + ki++ ++ m+s+++P +l+k e+++ el +r+ + a + +r+t+ sdi +a+++ + + fl d+ p Do022874.1 32 DEFWRKTledIENTANLNNHALPLTSVAKIIRDNQGSLMMSSDTPPFLTKLLEILVQELIVRASMFAISHDRSTILESDIYEAINSRESYVFLSDVLPM 130 67999876679999*********************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	2.1E-6	42	115	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	2.64E-15	43	132	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-13	53	129	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MANGSKEGPE HPHELNGSPA TPLPSPQQQE IDEFWRKTLE DIENTANLNN HALPLTSVAK 60 IIRDNQGSLM MSSDTPPFLT KLLEILVQEL IVRASMFAIS HDRSTILESD IYEAINSRES 120 YVFLSDVLPM YGTNPDQTSM SNNVPQLQQV HMGSQFLATT STLIENGPTD PLYKLGEQSF 180 QFPKDTLVST TNTQPDPLEL KNDEDLNNES TTSSGSIDKT K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022874.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450581.1	2e-65	uncharacterized protein LOC8071541
TrEMBL	A0A1E5WJM4	1e-160	A0A1E5WJM4_9POAL; Uncharacterized protein
STRING	Si026839m	1e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17894	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-16	nuclear factor Y, subunit C2