PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022746.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 173aa    MW: 19259.6 Da    PI: 4.9542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022746.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08246344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+t E e++ +a   +  +   +W+++a+ +g g+t  +++ ++
       Do022746.1  2 EWSTSENERFERALDTYDRDtpdRWERVAAAVGGGKTVDDVRRHY 46
                     7*****************99************************9 PP
2Myb_DNA-binding27.85.8e-0985129344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       W+t E e++ +a + +  +   +W+++a+ +g g+t  ++k ++
       Do022746.1  85 EWSTSENERFERALNTYDRDtpdRWERVAAAVGGGKTVDDVKRHY 129
                      7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.954154IPR017884SANT domain
PfamPF002494.0E-6246IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-9252IPR009057Homeodomain-like
SMARTSM007172.3E-4252IPR001005SANT/Myb domain
PROSITE profilePS512939.37281137IPR017884SANT domain
SMARTSM007173.3E-782135IPR001005SANT/Myb domain
PfamPF002492.1E-685129IPR001005SANT/Myb domain
SuperFamilySSF466891.6E-985136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEWSTSENER FERALDTYDR DTPDRWERVA AAVGGGKTVD DVRRHYDLLK EDLGDILSGG  60
YGYPSGRSGD ARNGNRNNNR GGVMEWSTSE NERFERALNT YDRDTPDRWE RVAAAVGGGK  120
TVDDVKRHYD LLKEDLVDIL SGGYGYPSGP SGDARNGNGN NNNRGGRANR PQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-163147375RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313364.17e-30protein RADIALIS-like 3
SwissprotQ1A1735e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5WKY21e-120A0A1E5WKY2_9POAL; Uncharacterized protein
STRINGMLOC_69872.16e-30(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-21RAD-like 6