PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do022640.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 323aa MW: 34410.4 Da PI: 9.1515

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022640.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	101.7	4.4e-32	13	72	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l cprC st+tkfCyynnyslsqPr+fC++CrryWt+GGalr++P ++ ++++++ Do022640.1 13 PESGLMCPRCRSTETKFCYYNNYSLSQPRHFCRTCRRYWTHGGALRDLPFSSSIQRRRRR 72 677899********************************************9986555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	1	61	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-29	17	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.385	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MMELARLAKI PQPESGLMCP RCRSTETKFC YYNNYSLSQP RHFCRTCRRY WTHGGALRDL 60 PFSSSIQRRR RRNKSSNKHT SSKVASCASG TGARASSSSS SSGATVPSGR VEQLPLSLAP 120 LDPVGGAERH RTGASRLWFP RHSSQDPVGY RQLGNSIGAA TTIRPENQCY IPQRQPPFSF 180 LGYKNAVTAA TSAICPFSAE AGGSEAGSFA GQMQAISFSR VPGSAEPASE VMAAVVENPP 240 IISSTETMME TWMSSPGEEF LAGLQGENDL LRFLGSGSWA CGYGYTAGNG ASSRGSSCTV 300 APGDAWPDPS GFASSFSGRS TIL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685501.1	1e-130	dof zinc finger protein 1-like
TrEMBL	A0A1E5UYG5	0.0	A0A1E5UYG5_9POAL; Dof zinc finger protein DOF3.6
STRING	Si036341m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22884	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-29	OBF-binding protein 3