PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022620.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 283aa    MW: 31912 Da    PI: 7.2413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022620.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53141411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 l pGfrFhPtdeel+ +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++
  Do022620.1  14 LLPGFRFHPTDEELIGFYLKRKIQQKPLSI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGTK 111
                 579***************************.89***************9888999***************************************95666 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +glkk+Lvfykgra kg+ktdW+mheyr+
  Do022620.1 112 CIGLKKSLVFYKGRAAKGVKTDWMMHEYRM 141
                 7***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5612146IPR003441NAC domain
PROSITE profilePS5100552.92314172IPR003441NAC domain
PfamPF023652.4E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDERADMDKS DEVLLPGFRF HPTDEELIGF YLKRKIQQKP LSIELIRQLD IYKFDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEYR MPSLNDPSLP KTPKTKNIPA NKSSAVTSVL LSMAPGIVNS  180
MNEALPNTET EQLEPSYGYT NDWGIDANGG IGNKDGDDPY TRKPGDGYSS GTECGIPRKI  240
KFPFDLGVDS PDDWTRSMQC DSLPCPPPPT EMSNSNSTEK YYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501414117142NO APICAL MERISTEM PROTEIN
1ut4_B1e-501414117142NO APICAL MERISTEM PROTEIN
1ut7_A1e-501414117142NO APICAL MERISTEM PROTEIN
1ut7_B1e-501414117142NO APICAL MERISTEM PROTEIN
4dul_A1e-501414117142NAC domain-containing protein 19
4dul_B1e-501414117142NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801988.11e-112protein FEZ-like
TrEMBLA0A1E5VJ670.0A0A1E5VJ67_9POAL; Protein FEZ
STRINGSb02g024593.11e-110(Sorghum bicolor)
STRINGTraes_5AL_F35B9FF8E.11e-111(Triticum aestivum)
STRINGTraes_5DL_0713E8429.21e-111(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-88NAC family protein