PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022582.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 504aa    MW: 52672.3 Da    PI: 7.3468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022582.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11164208655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    Er+RR r+++++ eLr+l+P+      +K++Ka+i   AveY+k+Lq
  Do022582.1 164 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVEYVKNLQ 208
                 568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.63E-14155209No hitNo description
SuperFamilySSF474591.96E-16156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.942158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16160224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8164208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDMEHQLQQL LHFSPGQEHF MAASPAGFFA VDGGGGGHPA HFQIGGGFVE PAGVVAPGID  60
DGGWVVEIED LIMQQLGDEL FGGADVISVG GAGDHHHHQP WQCDDDNGGS PEGPPPSVSL  120
DGDGGSPPPS GEQAGAGELE HHEDGDDASP AGGARKRRDR SKTIVSERKR RVRMKEKLYE  180
LRSLVPNITK MDKASIIADA VEYVKNLQAH ARALKEEVAA LEAQPRSPAG AGHEQQNQQQ  240
HVGRAAAAGR RQQDRAGDSG GRRGGHGARV TCVGAARVGE GRFFVTVECE KKDGVAAPLC  300
AAVESLACRV ESSSLVRSGP DRVVSTFTLK TLVILSLGPA ASTAAAAAAR RLPGDAHEPP  360
PPVLLRELPV PGPLPHAAPP QPGLPDPHGR LLLAPDPAHG RRRNRPSGPR RSLPSSPRLL  420
GLPPAAAAAS AAAAYKAAAA AAAVANSGGV DLTPAVRRNK KRKLPEKQLS DRVAALLPES  480
ALYMELLEFE ARVDAALTRK KVDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155170KRRDRSKTIVSERKRR
2456462RRNKKRK
3456463RRNKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350402e-66CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-136transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A1E5UWA90.0A0A1E5UWA9_9POAL; Uncharacterized protein
STRINGPavir.J29678.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-32FER-like regulator of iron uptake