PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do022443.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YA | ||||||||
Protein Properties | Length: 242aa MW: 25803.1 Da PI: 10.3422 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.6 | 1.1e-29 | 117 | 173 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQ+++Il+RR +Rak++++ ++ +++rkpylheSRh hAlrR+Rg+gGrF Do022443.1 117 DEPVYVNAKQFNGILRRRLARAKAARDLRV-SRNRKPYLHESRHLHALRRARGTGGRF 173 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.7E-33 | 115 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.594 | 116 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.0E-28 | 118 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.1E-21 | 119 | 141 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.1E-21 | 150 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MITGGRGHGG GAGPATAAAP LWAAAAARQW CAKFPPSLGD SDPLQDLKYH EPSTAAIAAY 60 PELHKYHGPF DLAPGQSMVW SNNASAGDQG QSYGLYSPYG SQAMHGRVLL PPAIAADEPV 120 YVNAKQFNGI LRRRLARAKA ARDLRVSRNR KPYLHESRHL HALRRARGTG GRFLNTKSLA 180 NTSMGGGSEP TEGSASKATR LNPVQDRQDV FLSSLMNMAG DGEGKAKWVS ATPRGCCDLL 240 KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 4e-18 | 117 | 175 | 2 | 61 | HAPB protein |
4g92_A | 4e-18 | 117 | 175 | 2 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 10 | GGRGHGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do022443.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968217 | 6e-81 | EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds. | |||
GenBank | EU975023 | 6e-81 | EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955490.1 | 1e-110 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_004955491.1 | 1e-110 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
TrEMBL | A0A1E5V8Z7 | 1e-178 | A0A1E5V8Z7_9POAL; Uncharacterized protein | ||||
STRING | Si032469m | 1e-107 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14663 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 4e-25 | nuclear factor Y, subunit A10 |