PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022378.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 592aa    MW: 65795.6 Da    PI: 5.3859
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022378.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS158.27.2e-493315272200
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cA+avs +d + a +lL ++++++sp+gd++qRla++f+e+L+arla+++s++yk+l +++ts    +e l+a++l+  ++ +  +++   N 
  Do022378.1 331 RTLLIHCAQAVSMDDRHSAIELLGQIKQHSSPRGDSNQRLAHCFAEGLQARLAGTGSQVYKSLMAKRTS---LVEYLKAYQLYLTTCCFKMMAYKFSNM 426
                 679*************************************************************99999...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +I +  +g ++vHi+D+++ + lQW +Ll  L + ++gpp++R Tg++ p++g   +  +eetg rL+k A+++gv+f+f+  ++k++e++ +++L+++
  Do022378.1 427 TIAKVSAGRKKVHIVDYGMHHALQWSSLLGWLGTLEDGPPEVRFTGIDLPQPGfrPAALIEETGCRLSKCAHQFGVTFKFRS-IMKKWETVCVDDLNID 524
                 ****************************************************9999999***********************.7*************** PP

        GRAS 198 pgE 200
                 ++E
  Do022378.1 525 TDE 527
                 999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.424304592IPR005202Transcription factor GRAS
PfamPF035142.5E-46331527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MATTPPELPG QGDPEPFSPS VFLDLPPTPR PPEREGEENP AASSDDLVLP FISRILMEDD  60
ISDKVFYQCP DHPALLQVQQ PFAQILSDAA ACSNSAATNT KGSGTDALSP SSGAPEFANA  120
TWPYDPVQLS ELLLSTSRPD MRVGLGDTTV TADDVTQLFL PQKEGTTVDS HQNRVTMDIL  180
NLAFLRGMGE ANKFLPTDNS LLVNLEATSE EHLPWDSNLS HGIAPCQVRK EDEVDGMLLL  240
KGIGNGCGHK NRRNWDDLQA ETGRNSKLMV PEPEETGEVV DEIIINDYRL CINEMQGLSI  300
TMGSRDEKNI RKGNGKPVQG KHSSDEVVDW RTLLIHCAQA VSMDDRHSAI ELLGQIKQHS  360
SPRGDSNQRL AHCFAEGLQA RLAGTGSQVY KSLMAKRTSL VEYLKAYQLY LTTCCFKMMA  420
YKFSNMTIAK VSAGRKKVHI VDYGMHHALQ WSSLLGWLGT LEDGPPEVRF TGIDLPQPGF  480
RPAALIEETG CRLSKCAHQF GVTFKFRSIM KKWETVCVDD LNIDTDEMRN HRAGLRQLPL  540
DPDIVKVIRK NVKDRYHKDF DIDVDHRWLL EGWKGRILCA MSTWVADDAV SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-203345278201GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462924.10.0scarecrow-like protein 34
TrEMBLA0A1E5WAY90.0A0A1E5WAY9_9POAL; Scarecrow-like protein 9
STRINGSb02g034550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2284922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-69GRAS family protein