PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022351.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 385aa    MW: 41773.8 Da    PI: 6.3983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022351.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232e-07138160123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cgk F+r  nL+ H+r H
  Do022351.1 138 HSCKVCGKGFKRDANLRMHMRGH 160
                 79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-5136163No hitNo description
Gene3DG3DSA:3.30.160.602.0E-6138164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321138165IPR007087Zinc finger, C2H2
SMARTSM003550.0017138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM0035543197230IPR015880Zinc finger, C2H2-like
SMARTSM0035527235257IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEAHQLLDQS KAGGCSSDDP RTVLTYLTFL EQKIGHLRGI ICSAPRPPRQ IVSAELSCIA  60
VQLVSISKTL AAASGTATAE EGAKSPPLPQ RAATPSEGDS DSSDHDLHAE DDDERLPPAG  120
SYEVIELDKD EILAPHVHSC KVCGKGFKRD ANLRMHMRGH GEEYKTAAAL AKPIRDAAAA  180
PSSSPQGADT RTTRCFYSCP FVGCKRNREH KSFQPLKTAV CVKNHYRRSH CDKSYTCRRC  240
NVKRFSVLAD LRTHEKHCGR DRWVCSCGTS FSRKDKLFGH VAAFDGHAPA LPPDEEDAAG  300
HTAANMLGSA SDQMLMDTEA VSRMANREFF SDSMFDGLSC SAIEGFVLTD GQRLDDGPGS  360
LSPMDLYSCD LDGFDIFGAP GIADF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794847.10.0zinc finger protein STOP1 homolog
TrEMBLA0A1E5WHS10.0A0A1E5WHS1_9POAL; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGPavir.J01834.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.25e-96C2H2 family protein