PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022315.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 266aa    MW: 30046 Da    PI: 8.3673
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022315.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-141149341
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                i n+  r   f kR +g+lKKA+EL +LC+a+++v+++ 
  Do022315.1 11 ITNTLTRRAAFKKRSKGLLKKASELETLCGAKACVVVYV 49
                8999*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-18173IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.932148IPR002100Transcription factor, MADS-box
CDDcd002666.37E-23268No hitNo description
PRINTSPR004045.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131148IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRKKVNLQW ITNTLTRRAA FKKRSKGLLK KASELETLCG AKACVVVYVE GEVQPEVWPA  60
DHEEARLRLT KYRDMPELGN FKKTENLKDF LDGRITKLRG QVNKSESENY KREILDLLHE  120
RINKHRLGLF NTSNEELTSL RKILVERSSE AKERLRQLGV GQGAPQDHRL QLLPGSSSQP  180
QDPNTCAEMQ MLAPAEEPQP QQQDWVVGWA PNGEELSTLR NSALLGSSSD CAGPSSSGDD  240
MMQRSNPGCY SAFPWTCEWN SFGRMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971529.13e-96agamous-like MADS-box protein AGL80
TrEMBLA0A1E5V1J10.0A0A1E5V1J1_9POAL; Uncharacterized protein
STRINGSi004925m1e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-19M-type_MADS family protein