PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do022184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 406aa MW: 42931.7 Da PI: 5.155 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 198 | 244 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Do022184.1 198 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 244 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.022 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-11 | 198 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 199 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 199 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-5 | 208 | 247 | No hit | No description |
CDD | cd04873 | 2.46E-6 | 282 | 367 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.8E-4 | 282 | 331 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MGGHGDHHHQ EAGVLVDDDE DELEHEAGAC GGATSGVVEQ GVGDRGGGQE TAAGMVFESS 60 SSVGSVSANM ASSQILCWPP PPPQQQLHHH QQHSVGGSGG QAPFFPLLPP LPPQPPPPPP 120 FFADFYARRA LQFAYDHHHS GGASTSSDPL GLGGLYMGHH HGGSGMMMPP PFASSPFGDF 180 GRMTAQEIMD AKALAASKSH SEAERRRRER INAHLARLRS LLPNTTKTDK ASLLAEVIQH 240 VKELKRQTSE ITEEACPLPT ESDELTVDAS SDEDGRLVVR ASLCCDDRAD LLPDLIRALK 300 ALRLRALKAE ITTLGGRVKN VLVITGDDSA DAGCEGTADD DQQEEEAAPM SPQHTVASIQ 360 EALRAVMERT ASASAAEEPG AASSGAAVLK RQRTTSLSAI LENRSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do022184.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106649 | 0.0 | AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797182.1 | 0.0 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-74 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1E5UY76 | 0.0 | A0A1E5UY76_9POAL; Transcription factor bHLH30 | ||||
STRING | Si039730m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-55 | bHLH family protein |
Publications ? help Back to Top | |||
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