PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do022129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 35892.6 Da PI: 4.4528 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4.1e-12 | 178 | 220 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+k+L Do022129.1 178 MAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVKEL 220 79*********************7.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.37 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-16 | 176 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-13 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-15 | 178 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 178 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.53E-5 | 184 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MELDEETFLD ELMSLRREAS TSAPWQVYPG GGGVMMSDLL FYGGEAGADA RGGGGGGGMD 60 LSPFQELAPM LPVATPHHTH EEFNFDYLSE VCNPYRSCGV AVPGEAAPGQ TLIAAPLHDA 120 MVEEETSGDK GNYYGGGGSP TFVFGGGAGE SSEMAAIRGL GGPHHRSKLH GAPSKNLMAE 180 RRRRKRLNDR LSMLRSIVPK ITKMDRTSIL GDTIDYVKEL TERIKVLEEE IGASPEDLNL 240 LNTLKDSFNS NNETMVRNST KIEICCPTNP GMLLSTVSAL EVLGLEMEQC VVSCFSDFGM 300 QASCLQVSDL IKGLFDSEYC LAMPFVCLQG WE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 186 | ERRRRKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do022129.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964715 | 2e-81 | EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985797.1 | 0.0 | transcription factor bHLH61 | ||||
TrEMBL | A0A1E5VQ23 | 0.0 | A0A1E5VQ23_9POAL; Transcription factor bHLH61 | ||||
STRING | Si036470m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10570.1 | 4e-50 | bHLH family protein |