PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021938.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 677aa    MW: 77004.7 Da    PI: 6.6831
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021938.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.93.5e-1758114259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg+ WrKYGq ++ gs +    Y C +a+C vkk v  s  d+++ve++Y+g+Hnh+
  Do021938.1  58 DDGFVWRKYGQQTIPGSGCLTINYECIQATCGVKKLVVFSL-DGQIVEMVYRGSHNHP 114
                 8**************************************99.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-1556116IPR003657WRKY domain
SuperFamilySSF1182902.88E-1556116IPR003657WRKY domain
SMARTSM007742.6E-1157115IPR003657WRKY domain
PROSITE profilePS5081114.58458116IPR003657WRKY domain
PfamPF031061.4E-1458114IPR003657WRKY domain
SMARTSM006145.4E-5192238IPR003656Zinc finger, BED-type
PfamPF028924.3E-7203235IPR003656Zinc finger, BED-type
SuperFamilySSF530986.68E-29321676IPR012337Ribonuclease H-like domain
PfamPF143727.3E-22571669IPR025525hAT-like transposase, RNase-H fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MENQLAHPQH PMSDQGFRPF TSLLMSTLAT PEQQPNSSVN TTSIQMPPLP YQFRCPPDDG  60
FVWRKYGQQT IPGSGCLTIN YECIQATCGV KKLVVFSLDG QIVEMVYRGS HNHPRPSERC  120
PGDGLGGYGP GPSAGTSMPL TTEVGGEGVE QLRGSSDSEE DDDGEERSDG DVAGASVTER  180
YVLAPAETFT MQTRSGTSQR KDGKIQGAVC RHCEKSLSGK TTGGTSHLLR HLKTCPARPA  240
TGRMQQQQPS VEKNWKFDQD KSLELLTKAL VSNLFSSPLT SSTTFRQLWT RICPTNNVVL  300
QGNIEEKFLS IFQNEKLKLE EKIELAPGGV FMTVTRSYLE YSKHFIILTV HFIDNEWNLN  360
RKVIRCCFAG CDDFDAEYYV SMFPCFESCH NFITGNVKAA EEKIVKEVVE NWNLEWKLLG  420
IISSLEGDAA VSALEKNLTE QNYLFAKCKL LNLPCIIDAL HDLFGYEINE YVVRTSRVWF  480
EYMTCSPLRR DKYKEILSRL QISRPSFGSQ KWYLTFYSLE AALQFNNELP NPEQLDSKSY  540
PPKPSYTQLK AAENFCDLVR SIYDAIKVVS RTCNVTLNSQ FHAIWNLKIA LLRSSTKENI  600
DQVFNVEEMQ LKFDQLWRKW YLWLSLAVVL DPTYKIRLLI VCFKEAFGTQ AKKYILEVRG  660
KLYELFLQYS FHVDQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021938.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320383.10.0zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1
RefseqXP_021320384.10.0zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1
RefseqXP_021320385.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLA0A1E5WD590.0A0A1E5WD59_9POAL; Uncharacterized protein (Fragment)
STRINGSi013326m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-15WRKY DNA-binding protein 3