PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do021915.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 310aa MW: 33195.1 Da PI: 6.2372

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do021915.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.9	1e-45	15	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeel+++yL++k+++ +++ +++evdiy++ePwdL p+ +e+ yfF++r+ k ++g r+nrat++gyWk+tgkdk+vl++ Do021915.1 15 LPPGFRFRPTDEELLTHYLAPKAADAGFTAPGAVREVDIYRAEPWDLlPAgggGGGGEDGGGYFFCRRSVKFPSGLRTNRATRAGYWKSTGKDKAVLRQ 113 79**************************999**********544333222244477********************************8 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g g+kktLvfy+grap+g +t+Wvmheyrl Do021915.1 114 qqhgrgGGDPAGVKKTLVFYRGRAPTGDRTNWVMHEYRL 152 6665555555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-52	12	180	IPR003441	NAC domain
PROSITE profile	PS51005	52.383	15	180	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	16	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGGDDGRLRA PAGPLPPGFR FRPTDEELLT HYLAPKAADA GFTAPGAVRE VDIYRAEPWD 60 LLPAGGGGGG GEDGGGYFFC RRSVKFPSGL RTNRATRAGY WKSTGKDKAV LRQQQHGRGG 120 GDPAGVKKTL VFYRGRAPTG DRTNWVMHEY RLAQGHGYTT SPVLATGAQS EWVICRMFMK 180 KPPGETSSQL EQEAVLHPPL GDHLQPSVDG CHRDGGGKTP APAAAASDSD HTSCFSDTAL 240 AMAQGGNGIE GMLPLNHEEL LMTNCSSVAD FALASSPKAT QLRDELAADS FDFLPQLLDY 300 EAFPFILQDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-38	15	181	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-38	15	181	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-38	15	181	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-38	15	181	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-38	15	181	20	169	NAC domain-containing protein 19
3swm_B	3e-38	15	181	20	169	NAC domain-containing protein 19
3swm_C	3e-38	15	181	20	169	NAC domain-containing protein 19
3swm_D	3e-38	15	181	20	169	NAC domain-containing protein 19
3swp_A	3e-38	15	181	20	169	NAC domain-containing protein 19
3swp_B	3e-38	15	181	20	169	NAC domain-containing protein 19
3swp_C	3e-38	15	181	20	169	NAC domain-containing protein 19
3swp_D	3e-38	15	181	20	169	NAC domain-containing protein 19
3ulx_A	3e-38	15	185	15	173	Stress-induced transcription factor NAC1
4dul_A	3e-38	15	181	17	166	NAC domain-containing protein 19
4dul_B	3e-38	15	181	17	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do021915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462370.1	1e-117	NAC domain-containing protein 92
TrEMBL	A0A1E5UYL6	0.0	A0A1E5UYL6_9POAL; NAC domain-containing protein 79
STRING	Sb02g024530.1	1e-116	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15352	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	4e-56	NAC domain containing protein 80