PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 16626 Da PI: 9.059 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50 | 9.5e-16 | 44 | 141 | 3 | 94 |
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevl 93 G+rF+Pt+eel+ ++L+ k ++ k+++ +++kevd+y+v+ ++ + ++ + wy Fs+r +ky++gkr+ r+ + gyWk+ k +vl Do021829.1 44 SGVRFKPTNEELI-FFLRLKhADVLKMPV-DFFKEVDVYHVHXETTKaLXXESLNGYWYVFSPRXRKYKNGKRPARSvfeasgEQVGYWKSNTKLASVL 140 6************.677766155566888.99***********99983344445559*******************6577776669****999988887 PP NAM 94 s 94 s Do021829.1 141 S 141 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.282 | 42 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-16 | 43 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-7 | 44 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MALLCQEQWQ LQSACSNSLG TGDQAAAVVG QEVMMGPYTD TSSSGVRFKP TNEELIFFLR 60 LKHADVLKMP VDFFKEVDVY HVHXETTKAL XXESLNGYWY VFSPRXRKYK NGKRPARSVF 120 EASGEQVGYW KSNTKLASVL SVAKMTAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021829.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5UL84 | 1e-104 | A0A1E5UL84_9POAL; Uncharacterized protein | ||||
STRING | Si039443m | 7e-59 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 4e-14 | NAC domain containing protein 25 |