PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021675.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 537aa    MW: 58642.9 Da    PI: 4.5058
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021675.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-342193092101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw   gnsfvv+d + f++ +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g++ell++ik
    Do021675.1 219 FLTKTYDVVDDPNTDTVVSWGFAGNSFVVWDANAFSTVILPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEVFLRGQRELLKTIK 306
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
    Do021675.1 307 RRR 309
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-37215308IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-34215308IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-57215308IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-19219242IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-31219308IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-19257269IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340258282IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-19270282IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
TDLACLMAAA RPGEVEATMV VSPANAALIA PTCLATAPAR DAWRVYRAME LLAMNNLFNV  60
RSDIIRCSSD AGTVVSVPNM PGKEITVPVS ELPDFLVQDD HLSTTWDQIK ACQLAGFGVI  120
VNTFVDLEQP YCEEIPSLCF VKWSSVPPLL DRVCWLVGAT MDPFNGTVKE EDFDMDFDFT  180
GASAGGAPVA AAGASAWAVG VPELPRPMEG LGEAGPTPFL TKTYDVVDDP NTDTVVSWGF  240
AGNSFVVWDA NAFSTVILPR YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEVFLRGQRE  300
LLKTIKRRRP PSSPSAQQAQ GQPPAACLEV GQFGREGEVH RLHRDKGILL AEVVKLRQEQ  360
QATRAQMQAM EERITSAEQK QQQMTVFLAR ALKNPSFLRM LVDRQRLGGL QRELEDALSN  420
KRRRPIEYLP RDGESSSNAA AEAAVGNYIS SLPVGIDGVA EAENNVGRPD QNGSGEDTQS  480
FWVELLSLGL EEKHREGAGA GEEGSGADVD NEVDDDVDVL VQSIYHLNPN PGSPSGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2721030817129Heat shock factor protein 1
5d5v_B2e-2721030817129Heat shock factor protein 1
5d5v_D2e-2721030817129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021675.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0858160.0BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817582.10.0heat stress transcription factor A-2a-like
SwissprotQ84MN71e-146HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A2S3HV090.0A0A2S3HV09_9POAL; Uncharacterized protein
STRINGSi036148m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-75heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]