PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021282.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 335aa    MW: 35019.6 Da    PI: 6.7267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021282.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09161208455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Do021282.1 161 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 208
                 8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.75E-10155212No hitNo description
SuperFamilySSF474591.7E-16155222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16157219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLS AMCGAGLGAT GVAAPGAGDG  60
NDSSSCSGSG GADAGGFRKR RPDAYLDAKV DGNDMSKRPR GKQQLQQLCG VGEIAAPGKG  120
KQERPKPGAK KKAEAASTAA AAGQKTDYIH VRARRGQATD SHSLAERVRR ERISERMRYL  180
QELVPGCSKV TGKAGMLDEI INYVQSLQKQ VEFLSMKIAA SNPVVSFDIV EDLFGRQLKQ  240
ACGPAALPAA IALPAGQLEP SCLQMSPMQQ VHPSAAAGST GFGLDMVVNN MYPPAAATCP  300
VSAATPVNGA AAAWDIVSQN LFSGFDAQFQ SVESE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667150.0BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds.
GenBankKJ7268610.0KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.10.0transcription factor bHLH49-like
TrEMBLA0A1E5UZE10.0A0A1E5UZE1_9POAL; Transcription factor bHLH63
STRINGSi017630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-36cryptochrome-interacting basic-helix-loop-helix 1