PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021262.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 397aa    MW: 43426.4 Da    PI: 4.9063
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021262.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.25.9e-07445540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 C+ +++++  ++C+++   lC +C  + H+       Ht++
  Do021262.1  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                7*****************************657888889876 PP
2zf-B_box24.45.8e-084788540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 C+++++++++  C + +  lC++C  ++H        H+++
  Do021262.1 47 LCDRCGSQPATARCIEENASLCQNCDWNGHDAasgatgHKRQ 88
                7*****************************447778888876 PP
3CCT62.51.3e-21340383144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Do021262.1 340 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 383
                 899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
SMARTSM003361.7E-10147IPR000315B-box-type zinc finger
CDDcd000213.19E-6447No hitNo description
PROSITE profilePS501199.0014390IPR000315B-box-type zinc finger
CDDcd000211.38E-54790No hitNo description
SMARTSM003360.174890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368340382IPR010402CCT domain
PfamPF062031.1E-16340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPATARC  60
IEENASLCQN CDWNGHDAAS GATGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN  120
CEDGISMMTI DDSDATNHCG ASDDKRLLEI ASTTLMSDPP TGDKLKPLIG SSSGDGVNVL  180
PLATDQLAGP VSMTPKVPYA TDDDKFNDGS MYEDLCVDDT DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSF FEMKELPPFD SNNEEPKYMQ LECSNVVSAD SSLCIPVRQV RSSISQSFSG  300
LTGESSAGDH QDCGVSPMLL MGEPPWHPPG PEGSVAGGSR DSALTRYKEK KKRRKFDKKI  360
RYASRKARAD VRKRVKGRFI KAGEAYDYDP LSQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KKKRR
2349354KKKRRK
3350354KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432570.0AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953745.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-124COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1E5WLW30.0A0A1E5WLW3_9POAL; Zinc finger protein CONSTANS-LIKE 10
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-91B-box type zinc finger protein with CCT domain