PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021248.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 345aa    MW: 36370.4 Da    PI: 8.2848
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021248.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.2e-18126215186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +Wt+  +  L++a++++ e+l+rg+l++ +We+v+ ++     ++   +s +qCk+k++nl+kryk + ++  +   ++ s++p+f+++e
  Do021248.1 126 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqGKTTGAKSVEQCKNKIDNLKKRYKVECQRLASSGGGAISHWPWFKKME 215
                 5*************************************776544555799****************9999999988999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-20124217No hitNo description
Gene3DG3DSA:3.40.1160.102.7E-15269341IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.28E-10271332IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHQPGA PPPQAPTAAQ QPAPPPQPAQ AFCFVDAAVA AGAGSGSFAQ  60
AQEETNHHAE RGKAVHHAKR ARERADEFSS DGAEYCSYIN SGGGGKKGRG GAGSSGASDY  120
RKDREEWTDG AISSLLDAYT DRFEQLNRGN LRGRDWEDVA GAVTDGQGKT TGAKSVEQCK  180
NKIDNLKKRY KVECQRLASS GGGAISHWPW FKKMEQIVGN SASPASSKPL AIAEDEKPRP  240
QQQHGSKRYP LSSTGPATVV GSSRANPLSN PKWKRVLLKI GGTALAGAAP QNVDPKIIML  300
IAREVQVACH HGVEVAIVVG GRNVFCGDNW VAATGTDRAS TYPIG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823789.10.0uncharacterized protein LOC112899509 isoform X1
TrEMBLA0A1E5V7F80.0A0A1E5V7F8_9POAL; Uncharacterized protein
STRINGPavir.Gb01778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-86Trihelix family protein