PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | RAV | ||||||||
Protein Properties | Length: 294aa MW: 32832.1 Da PI: 9.1796 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.5 | 2.1e-10 | 37 | 83 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+ + +grW A+I++ + r++lg+f e Aa+ ++ a+++++g Do021229.1 37 FKGIVLQP-TGRWGAQIYEG-----HERVWLGTFPDQETAARDYDVAALRYRG 83 79999999.9*********3.....6*************************97 PP | |||||||
2 | B3 | 89.1 | 3.5e-28 | 146 | 236 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rl++p+k++e++ ++ + +++ l +ed++g++W+++++++++s++yvl+kGW +Fv+++gL++gD+v F++ Do021229.1 146 FEKTVTPSDVGKLNRLIVPRKHVERYlpplsttEKATGKGVVLAIEDSEGKVWRFRYSFWNSSQSYVLSKGWMRFVQEKGLRAGDTVSFSR 236 99****************************99977788999************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-17 | 36 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-21 | 36 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.808 | 36 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-14 | 37 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.45E-19 | 37 | 92 | No hit | No description |
Pfam | PF00847 | 9.4E-6 | 37 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-36 | 142 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-30 | 143 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.93E-29 | 144 | 236 | No hit | No description |
Pfam | PF02362 | 6.5E-25 | 146 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-21 | 146 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.508 | 146 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMESGSTETG LAAMDSSKES GDNDLQVQGP RQPLRSFKGI VLQPTGRWGA QIYEGHERVW 60 LGTFPDQETA ARDYDVAALR YRGWEAVTNF PAERAHKGQQ PLAFLAAHSK SEIVDMLRNH 120 TYADELRQGI RRGVPAPPAW ARVPLFEKTV TPSDVGKLNR LIVPRKHVER YLPPLSTTEK 180 ATGKGVVLAI EDSEGKVWRF RYSFWNSSQS YVLSKGWMRF VQEKGLRAGD TVSFSRWTFG 240 PGERLLIDYR KKPEEEDAGM ADAIAAVQAP VVKIFGVDIA VGGREAREEH MASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-39 | 145 | 252 | 13 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021229.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971642.1 | 1e-144 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9AWS7 | 4e-94 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A1E5V530 | 0.0 | A0A1E5V530_9POAL; Putative AP2/ERF and B3 domain-containing protein | ||||
STRING | Pavir.Ea00485.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 5e-86 | related to ABI3/VP1 2 |