PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do021181.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MIKC_MADS

Protein Properties

Length: 166aa MW: 19013.7 Da PI: 7.1463

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do021181.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94	6.8e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngilKKA E+SvLCdaev v++fss gkly+++s Do021181.1 9 KRIENSTNRQVTFSKRRNGILKKAREISVLCDAEVGVVVFSSAGKLYDFCS 59 79***********************************************96 PP
2	K-box	42.3	3.3e-15	62	124	35	97
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 hl+GedL+sL+ keL +e++L+++l++ +k +e++ ++++ ++ e+e++ +L+++ Do021181.1 62 TSHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLMEHWELHVRNNKMLEDENKLLAFKLHQQ 124 57*********************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.291	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.1E-43	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.64E-42	2	62	No hit	No description
SuperFamily	SSF55455	2.49E-30	2	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.7E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-31	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	7.846	41	127	IPR002487	Transcription factor, K-box
Pfam	PF01486	3.0E-8	62	121	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGILK KAREISVLCD AEVGVVVFSS AGKLYDFCSP 60 KTSHLKGEDL NSLQPKELIM IEEALDNGLT NLNEKLMEHW ELHVRNNKML EDENKLLAFK 120 LHQQDIALSG SMRDLELGYH PDRDFAAQMP ITFRVQPSHP NLQENN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
6byy_A	8e-18	1	60	1	60	MEF2 CHIMERA
6byy_B	8e-18	1	60	1	60	MEF2 CHIMERA
6byy_C	8e-18	1	60	1	60	MEF2 CHIMERA
6byy_D	8e-18	1	60	1	60	MEF2 CHIMERA
6bz1_A	9e-18	1	60	1	60	MEF2 CHIMERA
6bz1_B	9e-18	1	60	1	60	MEF2 CHIMERA
6bz1_C	9e-18	1	60	1	60	MEF2 CHIMERA
6bz1_D	9e-18	1	60	1	60	MEF2 CHIMERA
6c9l_A	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	9e-18	1	60	1	60	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do021181.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ292959	1e-113	AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBank	BT064849	1e-113	BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
GenBank	DQ245021	1e-113	DQ245021.1 Zea mays clone 12283 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816957.1	1e-112	MADS-box transcription factor 2
Swissprot	Q40702	1e-108	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A1E5V0L9	1e-120	A0A1E5V0L9_9POAL; MADS-box transcription factor 2
STRING	Pavir.Ea03625.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3434	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	3e-45	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]