PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021090.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 298aa    MW: 31629.2 Da    PI: 4.4139
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021090.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.5e-17209245135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Do021090.1 209 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 245
                 **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.8E-1068103IPR010399Tify domain
PROSITE profilePS5132014.93868103IPR010399Tify domain
PfamPF062002.0E-1271102IPR010399Tify domain
PfamPF062031.1E-14137177IPR010402CCT domain
PROSITE profilePS5101713.364137179IPR010402CCT domain
SMARTSM004011.8E-9203256IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-11207253No hitNo description
CDDcd002025.79E-16208264No hitNo description
Gene3DG3DSA:3.30.50.106.7E-14208247IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.0E-14209245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPDADVDAEM RDAAAAAAAA AAPSDDDGED DTGEEEEDED DVDDEDEEEP PAAAPVEEPP  60
APAPVSALPG NPNQLTLLFQ GEVYVFESVT PEKVQAVLLL LGRGELPPGL AGMVLANQNE  120
NKGYDDILRR TDIPAKRVAS LIRFREKRKE RNFDKKIRYA VRKEVALRMQ RRKGQFAGRA  180
SLEGESPAPG CDPGSQGSGL DFLSRESKCQ NCGTSEKMTP AMRRGPAGPR TLCNACGLMW  240
ANKGTLRSCP KAKVESPVVA IEQGGSDNKA LVTPKNDNVS ASNGEATSAA ETGAPKAP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649660.0EU964966.1 Zea mays clone 282829 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464073.11e-167GATA transcription factor 18
SwissprotQ10F251e-141GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A1E5VZT50.0A0A1E5VZT5_9POAL; GATA transcription factor 18
STRINGSb01g011840.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-60ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]