PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 209aa MW: 22432.2 Da PI: 9.6414 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 33 | 82 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+Er+RR++++s +L +l+Pk +s K ++ + L +A YIk+L Do021087.1 33 RKEIERKRRQHMKSLCVKLASLVPKeH---YSSKntMTQQSSLDEAAAYIKKL 82 579**********************55...45444699999**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-11 | 21 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.045 | 28 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-6 | 33 | 86 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-13 | 33 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-7 | 34 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-6 | 34 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDVKRSSSSS AAAEGRRNSA SNSSSGGSAA VERKEIERKR RQHMKSLCVK LASLVPKEHY 60 SSKNTMTQQS SLDEAAAYIK KLKERVDELQ QKRSSAQLLA GMRGGGGGGG ASTPAGTTTT 120 SSGAGSEEAD EEAMAAPPVV EVRHHNDGSS LEVVLISSVA RPFKLHEVVT VLEEEGAEII 180 NANFSVAGRK IFYTIHSRVY RLFIYTSFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 41 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021087.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967960.1 | 2e-91 | transcription factor bHLH162 | ||||
Refseq | XP_012701590.1 | 2e-91 | transcription factor bHLH162 | ||||
TrEMBL | A0A1E5VNC8 | 1e-149 | A0A1E5VNC8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00786.1.p | 1e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-15 | bHLH family protein |