PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021048.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 313aa    MW: 33506.4 Da    PI: 8.7912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021048.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
       Do021048.1 14 KGPWSPEEDSKLKEYIHKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding33.69.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt+  +k++w++
       Do021048.1  69 GDFSDDEDRIICNLFATIGSR-WSIIAAQLP-GRTDLAIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.776962IPR017930Myb domain
SuperFamilySSF466891.57E-2511109IPR009057Homeodomain-like
SMARTSM007174.4E-121364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-231569IPR009057Homeodomain-like
CDDcd001672.70E-91662No hitNo description
PROSITE profilePS5129421.04463117IPR017930Myb domain
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PfamPF002491.4E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2170117IPR009057Homeodomain-like
CDDcd001672.00E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDSKLKEYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC NLFATIGSRW SIIAAQLPGR TDLAIKNYWN TKLKRKLMYG  120
LQPYSTHNHH SSKKQQQLMF LAASSSAAAA PPEAAPSSLQ HLSSPHDYYH HYSSSGSYGS  180
NNSSTSLLSA AAASRGLIIN GGHQMMSTSG LDSGGSPAGL YLDELCATTS SSVHAQGLGM  240
ESFVFGGFQL QDDHHKALLL AAGVANQLEQ YSASSCYGEA KPLVSVTSGG NGAGVTSTSS  300
SFFYDSSYSN NGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021048.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956269.11e-144myb-related protein Hv1
TrEMBLA0A1E5V0S70.0A0A1E5V0S7_9POAL; Transcription factor RAX2
STRINGSi030544m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-72myb domain protein 68